PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G29560.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 540aa    MW: 60681 Da    PI: 7.5529
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G29560.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.13.9e-19282377395
                      EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      k+lt+sdv++ gr+v+pk+ ae+h   + ++e++tl++ d +   +W++k+++  ++ks++yvl+  + +Fvk +gL++gD+++++ + +++++
  OBART04G29560.2 282 KELTNSDVGNIGRIVMPKRDAEAHlpALHQREGVTLKMDDfKFETTWNFKYRFwpNNKSRMYVLE-STGGFVKHHGLQTGDIFIIYKS-SESGK 373
                      89************************888999********7778*******9989999999**99.9*******************43.37777 PP

                      .EEE CS
               B3  92 lvvk 95 
                      +vv+
  OBART04G29560.2 374 FVVR 377
                      7775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-25279378IPR015300DNA-binding pseudobarrel domain
CDDcd100175.61E-23279377No hitNo description
SuperFamilySSF1019361.15E-18279375IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.516280382IPR003340B3 DNA binding domain
SMARTSM010194.2E-9280380IPR003340B3 DNA binding domain
PfamPF023624.8E-15282377IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MADARGSSSS SGDGGGGEGK GGAGHGDFVG GGQHNWYHGI LGAVPPPNVG RQNIVHHQYP  60
AASLIQQHHQ SPTMPLPMAQ LPYVPQYTVL PTPAVLPSFS LVSQYDLSLI ILFDRSSENF  120
QDWVPSNNVA APHVPSAFQD WRQMCNGSAF MPFGQTAANS NGFYQNLTFN SWTSNNMPRN  180
PVYTSFHPAA IEDHHAPLFH SNNHDIDPGW IKHLYLLLHL FHRCHHHPMD PPIVFRRSDM  240
ESEKNDDNPD QIPVSEPPSM NQNGENLIIR FNCREYRVIL RKELTNSDVG NIGRIVMPKR  300
DAEAHLPALH QREGVTLKMD DFKFETTWNF KYRFWPNNKS RMYVLESTGG FVKHHGLQTG  360
DIFIIYKSSE SGKFVVRGEK AIKPNAIMPV VDCSCKNELN KSEECGSVPF TSTTYGESDG  420
EDYSGDRSSP GAGEVADEGV RDAEPTPHTS FCMEAWREGG ETTSEAIATS RHPQRRLRRR  480
TPGAASAPRR SRRPAITIFR KPEFGWYCCA KINRKESEIR EQVSKEKVTR RAPFWEKIPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A3e-342713834117B3 domain-containing transcription factor LEC2
6j9c_D3e-342713834117B3 domain-containing transcription factor LEC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0728740.0AK072874.1 Oryza sativa Japonica Group cDNA clone:J023145I07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880492.10.0putative B3 domain-containing protein Os04g0676650
SwissprotQ7XKC40.0Y4765_ORYSJ; Putative B3 domain-containing protein Os04g0676650
TrEMBLA0A0D3G1P40.0A0A0D3G1P4_9ORYZ; Uncharacterized protein
STRINGOS04T0676650-000.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-37B3 family protein