PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G29560.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 682aa    MW: 75361.9 Da    PI: 9.5152
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G29560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.65.5e-19424519395
                      EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      k+lt+sdv++ gr+v+pk+ ae+h   + ++e++tl++ d +   +W++k+++  ++ks++yvl+  + +Fvk +gL++gD+++++ + +++++
  OBART04G29560.1 424 KELTNSDVGNIGRIVMPKRDAEAHlpALHQREGVTLKMDDfKFETTWNFKYRFwpNNKSRMYVLE-STGGFVKHHGLQTGDIFIIYKS-SESGK 515
                      89************************888999********7778*******9989999999**99.9*******************43.37777 PP

                      .EEE CS
               B3  92 lvvk 95 
                      +vv+
  OBART04G29560.1 516 FVVR 519
                      7775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-18421517IPR015300DNA-binding pseudobarrel domain
CDDcd100171.08E-22421519No hitNo description
Gene3DG3DSA:2.40.330.106.7E-25421520IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.2E-9422522IPR003340B3 DNA binding domain
PROSITE profilePS508639.516422524IPR003340B3 DNA binding domain
PfamPF023626.9E-15424519IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MADARGSSSS SGDGGGGEGK GGAGHGDFVG GGQHNWYHGI LGAVPPPNVG RQNIVHHQYP  60
AASLIQQHHQ SPTMPLPMAQ LPYVPQYTVL PTPAVLPSFS LVSQYDLSLI ILFDRSSENF  120
QDWVPSNNVA APHVPSAFQD WRQMCNGSAF MPFGQTAANS NGFYQNLTFN SWTSNNMPRN  180
PVYTSFHPAA IEDHHAPLFH SNNHDIDPEF LGNRHLHGVD IAGAPPAKAT SPATAGGLLT  240
NTAPATMSQI HARCRRRQIY RCCGLLPRAP PPSDPCAFAR AAITAAGSAR GLLSHLYGGL  300
VFWLVGKRKL GEKRERKRKV VAGMTNFRMD QAFVPASSPF PPVSSSSHGF SSTKISNGPT  360
YTKKAKKSNV KDPPIVFRRS DMESEKNDDN PDQIPVSEPP SMNQNGENLI IRFNCREYRV  420
ILRKELTNSD VGNIGRIVMP KRDAEAHLPA LHQREGVTLK MDDFKFETTW NFKYRFWPNN  480
KSRMYVLEST GGFVKHHGLQ TGDIFIIYKS SESGKFVVRG EKAIKPNAIM PVVDCSCKNE  540
LNKSEECGSV PFTSTTYGES DGEDYSGDRS SPGAGEVADE GVRDAEPTPH TSFCMEAWRE  600
GGETTSEAIA TSRHPQRRLR RRTPGAASAP RRSRRPAITI FRKPEFGWYC CAKINRKESE  660
IREQVSKEKV TRRAPFWEKI PF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A3e-344195232106B3 domain-containing transcription factor FUS3
6j9b_D3e-344195232106B3 domain-containing transcription factor FUS3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0728740.0AK072874.1 Oryza sativa Japonica Group cDNA clone:J023145I07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880492.11e-140putative B3 domain-containing protein Os04g0676650
SwissprotQ7XKC41e-141Y4765_ORYSJ; Putative B3 domain-containing protein Os04g0676650
TrEMBLA0A0D3G1P30.0A0A0D3G1P3_9ORYZ; Uncharacterized protein
STRINGOBART04G29560.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2156545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.18e-37B3 family protein