PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G29550.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 433aa    MW: 48731.6 Da    PI: 8.5564
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G29550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.65.5e-19299394395
                      EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      k+lt+sdv++ gr+v+pk+ ae+h   + ++e+++l++ d +   +W++k+++  ++ks++yvl+  + +Fvk++gL++gD+++++ + +++++
  OBART04G29550.1 299 KELTNSDVGNIGRIVMPKRDAEAHlpALHQREGVMLKMDDfKLETTWNFKYRFwpNNKSRMYVLE-STGGFVKQHGLQTGDIFIIYKS-SESEK 390
                      89************************888999********7778*******9989999999**99.9*******************43.37777 PP

                      .EEE CS
               B3  92 lvvk 95 
                      lvv+
  OBART04G29550.1 391 LVVR 394
                      7776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.03E-22296394No hitNo description
SuperFamilySSF1019361.1E-18296393IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-25296396IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.4E-10297399IPR003340B3 DNA binding domain
PROSITE profilePS508639.079297399IPR003340B3 DNA binding domain
PfamPF023623.2E-15299394IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MADTRGSTSS GGGDDRGREG HDDFAGGGQY NRYHRILEAV PSPLVRRENV VHHQYPTGLI  60
HHPSSTMPVA PCSYVPRYTM VPTSAMLPLQ HHHRQLQISQ ENFQDRVPSN NVAAPHLPSN  120
FQDLRLMCNG PPFMSYGQTA SNRNVLYQNL TPYSFNAWAS NNMPRNPVYT SYHPTAIEDP  180
HATPFHINNH DTDQGFFTVS TSFRVDQSFV HAPSPFPPVS SSSRSFSSAQ ISNGPTHAKK  240
AKKSDIKDQP IVLRRSDTES EKNDELDQTP ASEPSSMSHN SANLTIRFNC REYRVILRKE  300
LTNSDVGNIG RIVMPKRDAE AHLPALHQRE GVMLKMDDFK LETTWNFKYR FWPNNKSRMY  360
VLESTGGFVK QHGLQTGDIF IIYKSSESEK LVVRGEKAIK PNVIMPIVDC SCKNDLNNSE  420
ECGFAISLLT KKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A4e-352883914106B3 domain-containing transcription factor LEC2
6j9c_D4e-352883914106B3 domain-containing transcription factor LEC2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription regulator that binds specifically to the DNA sequence 5'-CATGC-3' of the IDE1 element found in the promoter of the barley iron deficiency-inducible gene IDS2. {ECO:0000269|PubMed:18025467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0728740.0AK072874.1 Oryza sativa Japonica Group cDNA clone:J023145I07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635183.10.0B3 domain-containing protein Os04g0676600
SwissprotQ7XKC50.0IDEFH_ORYSJ; B3 domain-containing protein Os04g0676600
TrEMBLA0A0D3G1P20.0A0A0D3G1P2_9ORYZ; Uncharacterized protein
TrEMBLI1PQW60.0I1PQW6_ORYGL; Uncharacterized protein
STRINGORGLA04G0258500.10.0(Oryza glaberrima)
STRINGOBART04G29550.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118172835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.13e-36B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]