PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART04G27520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 100aa MW: 11488.9 Da PI: 11.0234 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29 | 2.7e-09 | 31 | 57 | 2 | 32 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfs 32 +y+GVr +k +g+WvAeIr+p + r+r++ OBART04G27520.1 31 QYRGVRMRK-WGKWVAEIREPHK---RTRIW 57 6******99.**********732...36655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.5E-12 | 30 | 59 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-4 | 31 | 57 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.5E-5 | 31 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.38E-8 | 31 | 60 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 11.983 | 31 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence Send to blast |
MAPLAAAAAA VAAKEEQAAV LPLQQQQPRR QYRGVRMRKW GKWVAEIREP HKRTRIWRGV 60 PHGEEQHHHH EQKHQRTAWS GRAKNPDLNQ APSPENSDAE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061095 | 3e-74 | AK061095.1 Oryza sativa Japonica Group cDNA clone:006-207-A04, full insert sequence. | |||
GenBank | AK099333 | 3e-74 | AK099333.1 Oryza sativa Japonica Group cDNA clone:J033003O11, full insert sequence. | |||
GenBank | AL606635 | 3e-74 | AL606635.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010D21, complete sequence. | |||
GenBank | AP014960 | 3e-74 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D3G0Y7 | 4e-65 | A0A0D3G0Y7_9ORYZ; Uncharacterized protein | ||||
STRING | OBART04G27520.1 | 7e-66 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3943 | 30 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36900.1 | 2e-12 | related to AP2 10 |