PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G25950.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 328aa    MW: 35882.2 Da    PI: 7.4686
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G25950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.11.8e-49111661128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.v.ikevdiykvePwdLpk.........................kvkaeekewyfFskrdkk 67 
                      lppGfrFhP+deelvv+yL +k++g   e++  v + +vd++k+ePw+Lp+                         +++ + +ewyfFs +d+k
  OBART04G25950.1  11 LPPGFRFHPRDEELVVDYLYHKLSGGAGEFFGgVaMVDVDLNKCEPWELPAyllhnliifparararaagrrrradAARVGATEWYFFSLHDRK 104
                      79************************9666553349999***********6699**********9999998887664445888*********** PP

              NAM  68 yatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      yatg+r+nrat+sgyWkatgkd+ v++  +ge+vg++ktLvfy+grap+g+kt+Wvmhe+r+
  OBART04G25950.1 105 YATGQRTNRATRSGYWKATGKDRIVHEGtGGEVVGMRKTLVFYQGRAPRGSKTEWVMHEFRV 166
                      ***********************9999878999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.1E-513199IPR003441NAC domain
PROSITE profilePS5100553.13911199IPR003441NAC domain
PfamPF023653.9E-2612166IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSLISMMEAN LPPGFRFHPR DEELVVDYLY HKLSGGAGEF FGGVAMVDVD LNKCEPWELP  60
AYLLHNLIIF PARARARAAG RRRRADAARV GATEWYFFSL HDRKYATGQR TNRATRSGYW  120
KATGKDRIVH EGTGGEVVGM RKTLVFYQGR APRGSKTEWV MHEFRVDGHA VADHPSSSTS  180
SSSSNLLKED WVLCRVFYKS RTANPRPVVS GEAAVSLSGE LSLPPPPPPP LPVAPAVVDG  240
YTGGGYYEQD SSAGYHHHPH RPPTSAALPF KDLTDFRDLL SDMVQGGGGG GAAAAAAKSE  300
GFHLDWSEEE SSGYVQQSSM ASQAWNPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-43620415173NAC domain-containing protein 19
3swm_B2e-43620415173NAC domain-containing protein 19
3swm_C2e-43620415173NAC domain-containing protein 19
3swm_D2e-43620415173NAC domain-containing protein 19
3swp_A2e-43620415173NAC domain-containing protein 19
3swp_B2e-43620415173NAC domain-containing protein 19
3swp_C2e-43620415173NAC domain-containing protein 19
3swp_D2e-43620415173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8376680.0CT837668.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124G03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633392.11e-155NAC domain-containing protein 21/22
SwissprotQ84TE61e-60NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0D3G0F00.0A0A0D3G0F0_9ORYZ; Uncharacterized protein
STRINGOBART04G25950.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.16e-65NAC family protein
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]