PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G25320.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 220aa    MW: 22555.6 Da    PI: 10.2507
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G25320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58.2e-192474155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ++++GVr ++ +gr++AeIrdp     r +r++lg+f+tae Aa+a++ a++ ++g
  OBART04G25320.1 24 PRFRGVRKRP-WGRYAAEIRDP---A-RkARVWLGTFDTAEAAARAYDSAALHFRG 74
                     689*******.**********8...2.35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.4E-132474IPR001471AP2/ERF domain
CDDcd000182.92E-202481No hitNo description
Gene3DG3DSA:3.30.730.101.4E-312582IPR001471AP2/ERF domain
PROSITE profilePS5103224.3952582IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-222583IPR016177DNA-binding domain
SMARTSM003804.2E-362588IPR001471AP2/ERF domain
PRINTSPR003671.5E-102637IPR001471AP2/ERF domain
PRINTSPR003671.5E-104864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MAPRNAAEAV AVAVAEGGGA GMEPRFRGVR KRPWGRYAAE IRDPARKARV WLGTFDTAEA  60
AARAYDSAAL HFRGPKAKTN FPVAFAHAHH HAPPPPPPKA AALAAPTSST VESSSRDTPA  120
AAPVAAAAKA QVPASPSLDL SLGMSAMVAA QPFLFLDPRV AVTVAVAAPV PRRPAVVSVK  180
KEVARLDEQS DTGSSSSVVD ASPAVGVGLD LNLPPPTEEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-202683664ATERF1
3gcc_A1e-202683664ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066840.0AL606684.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633875.14e-85ethylene-responsive transcription factor 11
TrEMBLA0A0D3G0671e-149A0A0D3G067_9ORYZ; Uncharacterized protein
STRINGOBART04G25320.11e-150(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118532537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.14e-21ethylene responsive element binding factor 4