PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G23800.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 497aa    MW: 51456.4 Da    PI: 5.1915
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G23800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68.4e-31246304259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  OBART04G23800.1 246 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 304
                      699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.109240306IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-30243306IPR003657WRKY domain
SuperFamilySSF1182903.53E-26243306IPR003657WRKY domain
SMARTSM007741.4E-37245305IPR003657WRKY domain
PfamPF031061.1E-25247304IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MCDYFLQRME GDQAGGDLTD IVRAGGGAMP GSVVVDLPST AAEWQLPAEP MLFPPPPSLS  60
STTDGCGAGG AAGADIFGGG GGDLFSGLVD PFSSDYSSGA DFLDAMPDAM AKVGFDTAVG  120
GGCGGGGGGG GGSGGHLLDM SRKPLLPRGM PMAAVGGLAA PRVMPSPLSP RAIRPYPPIS  180
AGDMMKLGIT AGQAAGCAID AAVAGMQMSS PRSGGIKRRK NQARKVVCIP APTAAGGRPS  240
GEVVPSDLWA WRKYGQKPIK GSPYPRGYYR CSSSKGCSAR KQVERSRTDP NMLVITYTSE  300
HNHPWPTQRN ALAGSTRSHH SKNSGGGGGS GSKGSQNDKS QQQPSVKEEQ KDQATTATTT  360
TTSTITTTNS ASPVVVKEEE AALAGSSEAL ELERVMDTTA AGVVDHSELM DHVFSESYKP  420
MIPETGQPDD FFADLAELES DPMSLIFSKE YMEAKPSGGD HAQEKAMAKE LDPFDMLDWS  480
TTTNSSAGSS FEQGKRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-25220307280Disease resistance protein RRS1
5w3x_D4e-25220307280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1109120.0AK110912.1 Oryza sativa Japonica Group cDNA clone:002-173-C03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634477.10.0probable WRKY transcription factor 4
TrEMBLA0A0D3FZN80.0A0A0D3FZN8_9ORYZ; Uncharacterized protein
STRINGOBART04G23800.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.13e-65WRKY DNA-binding protein 35