PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART04G22220.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ERF

Protein Properties

Length: 219aa MW: 23899.7 Da PI: 5.36

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART04G22220.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.7	2.5e-17	51	101	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ykGVr + grWv+e+r+p g ++r++lg+f tae+Aa+a++ a+ +l+g OBART04G22220.1 51 PVYKGVRSRN-PGRWVCEVREP--HG-KQRIWLGTFETAEMAARAHDVAAMALRG 101 68**9666.9**9996..33.5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.6E-12	51	101	IPR001471	AP2/ERF domain
SMART	SM00380	1.7E-27	52	115	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.31E-20	52	110	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	3.1E-30	52	111	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.272	52	109	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.6E-8	53	64	IPR001471	AP2/ERF domain
CDD	cd00018	2.06E-26	53	111	No hit	No description
PRINTS	PR00367	5.6E-8	75	91	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009414	Biological Process	response to water deprivation
GO:0009631	Biological Process	cold acclimation
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MEWAYYGSGY SSSGTPSPVG GDGDEDSYMT VSSAPPKRRA GRTKFKETRH PVYKGVRSRN 60 PGRWVCEVRE PHGKQRIWLG TFETAEMAAR AHDVAAMALR GRAACLNFAD SPRRLRVPPL 120 GAGHEEIRRA AVEAAELFRP APGQHNAAAE AAAAVAAQAT AASAELFADF PCYPMDGLEF 180 EMQGYLDMAQ GMLIEPPPLA GQSTWAEEDY DCEVNLWSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-13	50	108	12	71	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00453	DAP	Transfer from AT4G25480	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL606640	0.0	AL606640.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019K04, complete sequence.
GenBank	AP014960	0.0	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	AY114110	0.0	AY114110.1 Oryza sativa (japonica cultivar-group) apetala2 domain-containing CBF-1-like protein mRNA, complete cds.
GenBank	AY785896	0.0	AY785896.1 Oryza sativa (japonica cultivar-group) cultivar Nipponbare OsDREB1E (DREB1E) gene, complete cds.
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855158	0.0	CR855158.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0147H17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635170.1	1e-161	dehydration-responsive element-binding protein 1E
Swissprot	A2XWL6	1e-162	DRE1E_ORYSI; Dehydration-responsive element-binding protein 1E
Swissprot	Q8H273	1e-162	DRE1E_ORYSJ; Dehydration-responsive element-binding protein 1E
TrEMBL	A0A0D3FZ49	1e-160	A0A0D3FZ49_9ORYZ; Uncharacterized protein
TrEMBL	A0A0D9ZPH9	1e-160	A0A0D9ZPH9_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0H4M3	1e-160	A0A0E0H4M3_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0PCW5	1e-160	A0A0E0PCW5_ORYRU; Uncharacterized protein
TrEMBL	I1PP10	1e-160	I1PP10_ORYGL; Uncharacterized protein
STRING	OGLUM04G22260.1	1e-161	(Oryza glumipatula)
STRING	ORUFI04G23890.1	1e-161	(Oryza rufipogon)
STRING	OS04T0572400-00	1e-161	(Oryza sativa)
STRING	ONIVA04G20840.1	1e-161	(Oryza nivara)
STRING	ORGLA04G0192900.1	1e-161	(Oryza glaberrima)
STRING	OBART04G22220.1	1e-161	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP196	36	261

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25480.1	5e-37	dehydration response element B1A

Publications ? help Back to Top
Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP Over-expression of OsDREB genes lead to enhanced drought tolerance in rice. Biotechnol. Lett., 2008. 30(12): p. 2191-8 [PMID:18779926] Li S, et al. Mutation of OsGIGANTEA Leads to Enhanced Tolerance to Polyethylene Glycol-Generated Osmotic Stress in Rice. Front Plant Sci, 2016. 7: p. 465 [PMID:27148296]