PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G19440.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 335aa    MW: 36459.4 Da    PI: 5.6838
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G19440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-1983133256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  OBART04G19440.1  83 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 133
                      59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.24E-3282141No hitNo description
SuperFamilySSF541712.55E-2383142IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.2E-3283141IPR001471AP2/ERF domain
SMARTSM003802.5E-3883146IPR001471AP2/ERF domain
PROSITE profilePS5103222.99883140IPR001471AP2/ERF domain
PfamPF008471.7E-1284133IPR001471AP2/ERF domain
PRINTSPR003674.8E-118495IPR001471AP2/ERF domain
PRINTSPR003674.8E-11106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSQPASPQQQ QQQPLQHQQM ISFGASPPCS TTQFVVPENA QQQQMLLRYW SEALNLSPRG  60
GPGGVPPWLY QQLLRVPPPP QKLYRGVRQR HWGKWVAEIR LPRNRTRLWL GTFDTAEDAA  120
MAYDREAFKL RGENARLNFP DRFLGKGRAG GSGRTSVSSS AAAAASCSSS SPSPPETPDD  180
ANTQQQAPQQ REQRDTAGVS MEKKQPQPPA PTSRQEGCSG GDAAAPYPAE MLHAPAACGG  240
MWVAPDESWF STWGPGSSFW DDYDMDNARG LFLHPRFTGD ETSMDHSGTQ ATVPAVAATA  300
AGMSMPCDDV PVTSSSSDLP PQGTPQTPTF MWKED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2082142465ATERF1
3gcc_A2e-2082142465ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076800.0AK107680.1 Oryza sativa Japonica Group cDNA clone:002-132-A07, full insert sequence.
GenBankAL6629760.0AL662976.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552300.0CR855230.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0115K01-H0319F09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634091.10.0ethylene-responsive transcription factor ERF054
TrEMBLA0A0D3FY750.0A0A0D3FY75_9ORYZ; Uncharacterized protein
TrEMBLI1PN880.0I1PN88_ORYGL; Uncharacterized protein
STRINGORGLA04G0165700.10.0(Oryza glaberrima)
STRINGOBART04G19440.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-36ERF family protein