PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART04G16670.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 301aa MW: 33016.9 Da PI: 5.5308

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART04G16670.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	32	3.3e-10	1	33	38	70
trihelix 38 mrergferspkqCkekwenlnkrykkikegekk 70 mre+gf rsp++C++kw+nl k++kk + ++++ OBART04G16670.1 1 MREQGFDRSPTMCTDKWRNLLKEFKKARSHARG 33 89*************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.4E-6	1	35	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MREQGFDRSP TMCTDKWRNL LKEFKKARSH ARGGGGGGVG GGGAGIGGGN CPAKMACYKE 60 IDDLLKRRGK PTGGGGAAVG SGAVKSPTVT SKIDSYLQFD KGFEDASIPF GPVEASGRSL 120 LSVEDRLEPD SHPLALTADA VATNGVNPWN WRDTSTNGGD NQVTFGGRVI LVKWGDYTKR 180 IGIDGTADAI KEAIKSAFGL RTRRAFWLED EDEVVRSLDR DMPVGTYTLH LDTGMTIKLY 240 MFENDEVRTE DKTFYTEEDF RDFLSRRGWT LLREYSGYRI ADTLDDLRPG VIYEGMRSLG 300 D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	8e-15	1	60	43	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00004	PBM	Transfer from 920224	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK103296	0.0	AK103296.1 Oryza sativa Japonica Group cDNA clone:J033125B02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635625.2	0.0	trihelix transcription factor GT-4
Swissprot	Q9FX53	1e-111	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A0D3FX90	0.0	A0A0D3FX90_9ORYZ; Uncharacterized protein
TrEMBL	I1PMF3	0.0	I1PMF3_ORYGL; Uncharacterized protein
STRING	ORGLA04G0137200.1	0.0	(Oryza glaberrima)
STRING	OBART04G16670.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5631	37	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-110	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]