PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G06440.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 281aa    MW: 29806.9 Da    PI: 10.3437
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G06440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.3e-30202260259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D ++WrKYGqK++kgs+fpr+YY+C++  gCp++k+ver+  dp+++++tYegeH+h+
  OBART04G06440.1 202 ADDFSWRKYGQKPIKGSPFPRGYYKCSTLrGCPARKHVERDPVDPSMLIVTYEGEHRHT 260
                      699***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.3E-20150199IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.809.3E-32189260IPR003657WRKY domain
PROSITE profilePS5081129.459196262IPR003657WRKY domain
SuperFamilySSF1182902.48E-25199260IPR003657WRKY domain
SMARTSM007741.4E-36201261IPR003657WRKY domain
PfamPF031061.2E-25203259IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MITMDLMSGY GRVDEQVAIQ EAAAAGLRGM EHLILQLSQT GTSERSPAPA PAQEQQQQVD  60
CREITDMTVS KFKKVISMLN RTGHARFRRG PVVAQSSGPA AVSGISAASS SFLSSVTGDG  120
SVSNGRGGGC GKPPLSSAAA AAMSAGVGHK RKCHDHAHSE NIAGGKYGST GGRCHCSKRR  180
KHRVKRTIRV PAISSKVADI PADDFSWRKY GQKPIKGSPF PRGYYKCSTL RGCPARKHVE  240
RDPVDPSMLI VTYEGEHRHT PSAAGQDHPP APPPPLALPL A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20189259271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000250|UniProtKB:Q0JEE2}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00464DAPTransfer from AT4G31550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells (By similarity) (PubMed:15618416). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (By similarity). Repressed by GA (PubMed:15618416). {ECO:0000250|UniProtKB:Q0JEE2, ECO:0000269|PubMed:15618416}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1009540.0AK100954.1 Oryza sativa Japonica Group cDNA clone:J023139N16, full insert sequence.
GenBankAK1214940.0AK121494.1 Oryza sativa Japonica Group cDNA clone:J033000L17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633572.11e-147WRKY transcription factor WRKY51
SwissprotQ6IEN11e-148WRK51_ORYSI; WRKY transcription factor WRKY51
TrEMBLA0A0D3FTS90.0A0A0D3FTS9_9ORYZ; Uncharacterized protein
STRINGOBART04G06440.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.13e-58WRKY DNA-binding protein 11