PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G02690.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 142aa    MW: 15659.6 Da    PI: 7.9241
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G02690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.11.7e-135088240
              TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                     ++++C+C ks+C+k+YC Cf+a  +Cs++C+C++CkN+e
  OBART04G02690.1 50 QHRSCRCVKSNCVKLYCPCFSAYGYCSQNCRCTNCKNRE 88
                     6789*********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.9E-104990IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163418.01950142IPR005172CRC domain
PfamPF036381.3E-105288IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MAAVNHGTDA SRAGPPYASA PRGNQVAPAS GHDSGDGSTL ISARSMSNDQ HRSCRCVKSN  60
CVKLYCPCFS AYGYCSQNCR CTNCKNREYY EDFVEERVDM IKMKNPRAFD PKIVRVQDAS  120
EIEPQSSNAV PMPEVQVPRT FV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7315891e-106AL731589.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19, complete sequence.
GenBankAP0149601e-106AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633502.16e-59protein tesmin/TSO1-like CXC 4
RefseqXP_025880815.16e-59protein tesmin/TSO1-like CXC 4
TrEMBLA0A0D3FSK81e-101A0A0D3FSK8_9ORYZ; Uncharacterized protein
STRINGOBART04G02690.11e-102(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122672336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.12e-17Tesmin/TSO1-like CXC domain-containing protein