PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G02230.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 367aa    MW: 38624.5 Da    PI: 7.7318
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G02230.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.53e-07197219123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C+ Cgk F+r  nL+ H+r H
  OBART04G02230.2 197 HYCQVCGKGFKRDANLRMHMRAH 219
                      68*******************99 PP
2zf-C2H212.90.00033283306123
                      EEETTTT.EEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                      y+C+ Cg k F   s+L++H + +
  OBART04G02230.2 283 YVCGRCGgKQFAVLSDLRTHEKHC 306
                      9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000180174186IPR018247EF-Hand 1, calcium-binding site
SuperFamilySSF576674.68E-6196223No hitNo description
Gene3DG3DSA:3.30.160.602.7E-6197221IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0034197219IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.653197224IPR007087Zinc finger, C2H2
PROSITE patternPS000280199219IPR007087Zinc finger, C2H2
SMARTSM00355110245278IPR015880Zinc finger, C2H2-like
SMARTSM0035530283305IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MNPQEFQFFQ GVEQEMLLLS HGGGGAAAPA PAAASDDVLA YHVGVLRDKV QQLEPLVGMV  60
VSPAAPHGHL RRDAAAMAAS SACSVLQEIT AAASAVAHRL EQASAASAAA SFRRGVAFAD  120
DAHAGGEQMF AAGAHGGGEG GGDEADASLF HHQPTVFRAG ATTTVAASSS GGGDDDGDGE  180
VDVVELEASY LLARYTHYCQ VCGKGFKRDA NLRMHMRAHG DEYKTAAALA STAMKAALAA  240
KRCWYSCPAE GCRWNRRHPR FQALKSVVCA KNHYRRSHCP KMYVCGRCGG KQFAVLSDLR  300
THEKHCGELR WLCSCGTFFS RKDKLMGHVA LFAAGHAPVP VAPEASPSTT TTGTTTDRSQ  360
NGGLIVV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432850.0AK243285.1 Oryza sativa Japonica Group cDNA, clone: J100051N01, full insert sequence.
GenBankAL6629590.0AL662959.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019G23, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635006.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A0D3FSF90.0A0A0D3FSF9_9ORYZ; Uncharacterized protein
STRINGORGLA04G0016600.10.0(Oryza glaberrima)
STRINGOBART04G02230.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.12e-70C2H2 family protein