PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G40450.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 384aa    MW: 41803.4 Da    PI: 5.0086
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G40450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM42.12.7e-13888176
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknr 76
                     l pG+ F+P+d+ lv+ +L++k+++ ++e  + i+++d+y+++P +L         ++++++ wyfF++ + +++++   +r
  OBART03G40450.1  8 LEPGYAFRPSDDGLVTLFLRPKIAKIPFEH-RLINHADVYSTDPTELVGehrpapGTHGSSRVWYFFCSPRYTSKRKASGRR 88
                     579************************999.89**************733567665556778******98776665444333 PP
2NAM46.98.6e-15912222128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy...Wkatgkdkev 92 
                      +pG+ FhP+d+ l++ +L++++++ ++e  + i+++d+y+++P +L  ++      ++  s+  +k  t+ r++ra+  g    Wk+ g +k+v
  OBART03G40450.1  91 APGYVFHPSDDGLITLFLRPSIAKIPFED-RLINHADVYSADPAELVGEH-RPAPGTHGSSSVWRK--TSGRRQRAVGGGCenvWKSEGGKKAV 180
                      59************************998.88**************7322.222355555555554..4567888877554455********** PP

              NAM  93 lskkgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                      + ++g+ vg  + + +       +g+a++ ++  W+m ey l
  OBART03G40450.1 181 IGADGRRVGYLQKFSYGvyesssSGSARSFTRLGWCMTEYGL 222
                      **********999999666777779999999*********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-16685IPR003441NAC domain
PROSITE profilePS5100510.612894IPR003441NAC domain
PfamPF023651.4E-61081IPR003441NAC domain
PROSITE profilePS5100523.7290241IPR003441NAC domain
SuperFamilySSF1019413.14E-2790241IPR003441NAC domain
PfamPF023652.8E-792221IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MDDDEIALEP GYAFRPSDDG LVTLFLRPKI AKIPFEHRLI NHADVYSTDP TELVGEHRPA  60
PGTHGSSRVW YFFCSPRYTS KRKASGRRQR APGYVFHPSD DGLITLFLRP SIAKIPFEDR  120
LINHADVYSA DPAELVGEHR PAPGTHGSSS VWRKTSGRRQ RAVGGGCENV WKSEGGKKAV  180
IGADGRRVGY LQKFSYGVYE SSSSGSARSF TRLGWCMTEY GLDDDAIDGA DKQVLCKVYR  240
SPRAVCAEAR TAAAKCSGSK RKADDGADHP EAPPSARPRQ EEAGSEHDEQ PELPPELDLD  300
ALLSAPMDEN LESTFSTAAT EQYMRYLMND EPLPWAPTMD PVDGGAGGGD EFIQTANGPC  360
MDGEVFARLA AGETLDDILG STSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629679.11e-174NAC transcription factor NAM-2
TrEMBLA0A0D3FR720.0A0A0D3FR72_9ORYZ; Uncharacterized protein
STRINGOBART03G40450.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.14e-10NAC domain containing protein 41