PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART03G38710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 236aa MW: 24939.2 Da PI: 10.6773 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 1e-18 | 76 | 125 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +gr++AeIrdp + +r +lg+f+taeeAa+a++aa +l+g OBART03G38710.1 76 RFRGVRQRP-WGRFAAEIRDP-----HlrRRLWLGTFDTAEEAAAAYDAASVRLRG 125 69*******.**********8.....556**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.10E-18 | 75 | 133 | No hit | No description |
PROSITE profile | PS51032 | 22.642 | 76 | 133 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-32 | 76 | 139 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.86E-20 | 76 | 133 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-28 | 76 | 134 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.4E-12 | 76 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-10 | 77 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-10 | 99 | 115 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MGTNPSLHEL AAGAAPRGRV VRILVRDADA TDSSSSEDEA VAVAQPRPRR RGKVGGGGGG 60 APRDGGGGGE ARPTARFRGV RQRPWGRFAA EIRDPHLRRR LWLGTFDTAE EAAAAYDAAS 120 VRLRGSSAAT NFASVRCYSL PPELPKPTIS PPEAAVRPIT LPIGTAEPTL LPRVKEEGES 180 CGGRVKEEAS SCEVQVLAPE PMWTMISGKR KKRSGCGTRV RAFHAVSARV EEVGGA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-18 | 77 | 132 | 6 | 62 | ATERF1 |
3gcc_A | 1e-18 | 77 | 132 | 6 | 62 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC133007 | 0.0 | AC133007.4 Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete sequence. | |||
GenBank | AC139172 | 0.0 | AC139172.2 Oryza sativa chromosome 3 BAC OSJNBb0042K11 genomic sequence, complete sequence. | |||
GenBank | AK068252 | 0.0 | AK068252.1 Oryza sativa Japonica Group cDNA clone:J013145D23, full insert sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. | |||
GenBank | CT829445 | 0.0 | CT829445.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA045M03, full insert sequence. | |||
GenBank | CU406213 | 0.0 | CU406213.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108D05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628091.1 | 1e-136 | ethylene-responsive transcription factor CRF5 | ||||
TrEMBL | A0A0D3FQL5 | 1e-165 | A0A0D3FQL5_9ORYZ; Uncharacterized protein | ||||
STRING | OBART03G38710.1 | 1e-165 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11573 | 28 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53290.1 | 7e-18 | cytokinin response factor 3 |