PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G36060.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 374aa    MW: 41226.1 Da    PI: 6.5087
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G36060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.67e-51391702128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                       pGfrFhPtdeelv++yL++kv++k+l++ e+ike+diyk++PwdLp +++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s
  OBART03G36060.1  39 LPGFRFHPTDEELVTFYLQRKVARKSLSI-EIIKEMDIYKHDPWDLPkASTVGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIYS 131
                      69***************************.89***************445556889************************************** PP

              NAM  95 k.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +     +ge +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  OBART03G36060.1 132 AavnsnSGESIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 170
                      9888888888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100549.71838187IPR003441NAC domain
SuperFamilySSF1019411.96E-5238173IPR003441NAC domain
PfamPF023651.3E-2440170IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MVTSKEFARD QAAMDQKIKS DVGEVVLAGD EEEDGDVVLP GFRFHPTDEE LVTFYLQRKV  60
ARKSLSIEII KEMDIYKHDP WDLPKASTVG GEKEWYFFCL RGRKYRNSIR PNRVTGSGFW  120
KATGIDRPIY SAAVNSNSGE SIGLKKSLVY YRGSAGKGTK TDWMMHEFRL PPAIAAADAS  180
PCMQEAVSTH SHALMLVRSP SPSSSRPRGL DHLQNLQEKH HLQEAAAAAG LEAAGAGAGD  240
GDRQGPTDGG GDEFMNCGLT PAISQQQQHG GRHQMMSTMS CNGGYFFNDG IHHSHSHHKL  300
HSQWGSLQMA PPEPKPEPEQ KPLSSPAMTI AFHQNDHGFP AAAADFYKDG YLEEIARMME  360
VADPSPTGFY DCRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-464017019142NO APICAL MERISTEM PROTEIN
1ut4_B6e-464017019142NO APICAL MERISTEM PROTEIN
1ut7_A6e-464017019142NO APICAL MERISTEM PROTEIN
1ut7_B6e-464017019142NO APICAL MERISTEM PROTEIN
3swm_A5e-464017022145NAC domain-containing protein 19
3swm_B5e-464017022145NAC domain-containing protein 19
3swm_C5e-464017022145NAC domain-containing protein 19
3swm_D5e-464017022145NAC domain-containing protein 19
3swp_A5e-464017022145NAC domain-containing protein 19
3swp_B5e-464017022145NAC domain-containing protein 19
3swp_C5e-464017022145NAC domain-containing protein 19
3swp_D5e-464017022145NAC domain-containing protein 19
4dul_A6e-464017019142NAC domain-containing protein 19
4dul_B6e-464017019142NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0735390.0AK073539.1 Oryza sativa Japonica Group cDNA clone:J033041C24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628846.10.0transcription factor JUNGBRUNNEN 1
TrEMBLA0A0D3FPQ20.0A0A0D3FPQ2_9ORYZ; Uncharacterized protein
STRINGOBART03G36060.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.13e-75NAC domain containing protein 42