PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G35180.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 286aa    MW: 30871.2 Da    PI: 11.0332
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G35180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.0001393115123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC+ Cg+sFs+   L  H  +H
  OBART03G35180.1  93 FKCSVCGRSFSSYQALGGHKTSH 115
                      89**********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.46E-592119No hitNo description
SMARTSM003550.008193115IPR015880Zinc finger, C2H2-like
PfamPF139124.5E-1293116IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.7893120IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MSSASSMEAL HAAVLKEEQQ QHEVEEATVV TSSSATSGEE GGHLPQGWAK RKRSRRQRSE  60
EENLALCLLM LALGGHHRVQ APPPLSAPVG AEFKCSVCGR SFSSYQALGG HKTSHRFKLP  120
TPPASPVLAP ASSEVHSPLA FSPPRGGHHR VQAPPPLSAL VRPSAGAEFK CSVCGKPIRR  180
LAATRRATGS SCRLRPQLRQ RPLRRPGVRP QPPGRRHSRP LLATVAAESE VGSSGNGQSA  240
TRAFDLNLPA VPEFVWRPCS KGKKMWDDEE EVQSPLAFKK PRLLTA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633313.15e-93zinc finger protein 1
SwissprotQ424305e-72ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A0D3FPF50.0A0A0D3FPF5_9ORYZ; Uncharacterized protein
STRINGOBART03G35180.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-13salt tolerance zinc finger