PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G26360.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 380aa    MW: 42459.4 Da    PI: 6.9524
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G26360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.16.9e-18421231499
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                        +++p +fa++++g    s ++ l+++sg++W++ +   +++ +  vl+ GWkeFv+ ng++egD ++F+++g  s+f   v +f+ 
  OBART03G26360.1  42 ESMTVPARFANNFNGH--ISEEVNLRSPSGETWSIGV--ANSDAGeLVLQPGWKEFVDGNGIEEGDCLLFRYSGVsSSF--DVLIFDP 123
                      4599******888666..6779***************..5555445***************************987888..8888875 PP
2B338.32.4e-12262342585
                      -..-HHHHT..T-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   5 ltpsdvlks..grlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        +s+v +s  +++ ++ +fa ++ g ++ +  +++le  ++g +W v + +r++ ++++ ++GW++F+ +n+L + D+++F+l+
  OBART03G26360.1 262 IHSSHVRSSkyCIVGVSPEFAGKYlGAVE-R--EVVLERaSRGGEWHVLFVHRQNTRGFY-GAGWRQFAGDNHLVAHDVCLFELT 342
                      4445555445599999********76663.3..6999998999*******9999999986.77*******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-2227126IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.56529124IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-2130129IPR015300DNA-binding pseudobarrel domain
CDDcd100173.51E-1930122No hitNo description
SMARTSM010193.0E-632124IPR003340B3 DNA binding domain
PfamPF023629.6E-1542122IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-16252369IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-15252342IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.165258372IPR003340B3 DNA binding domain
SMARTSM010190.0062258362IPR003340B3 DNA binding domain
CDDcd100171.20E-11258341No hitNo description
PfamPF023624.6E-10270342IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MGMLKIGKNC SVCKEWQEHC YWSHMADHSK HFLKHMVGDF TESMTVPARF ANNFNGHISE  60
EVNLRSPSGE TWSIGVANSD AGELVLQPGW KEFVDGNGIE EGDCLLFRYS GVSSSFDVLI  120
FDPSGCEKAS PHFVGSHGFG RAENSAGAEQ GGRSGRPTPP IVDGDNGHRH HLEMTLHRNS  180
CRSIPRACKR SLFSDETEAK ENDGEDEDED VVAAAEGGRY GEYYFSRHGR VAEYNLREED  240
REEISRVPVP VQPGNAVFVQ VIHSSHVRSS KYCIVGVSPE FAGKYLGAVE REVVLERASR  300
GGEWHVLFVH RQNTRGFYGA GWRQFAGDNH LVAHDVCLFE LTMVDAAAGG GGNRRRRWSR  360
RPTMTVHVLR RVRGRFVLLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086600.0AK108660.1 Oryza sativa Japonica Group cDNA clone:002-148-F01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628568.10.0B3 domain-containing protein Os03g0622200
SwissprotQ10GM30.0Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBLA0A0D3FLD30.0A0A0D3FLD3_9ORYZ; Uncharacterized protein
STRINGOBART03G26360.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-27B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]