PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G26350.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 376aa    MW: 42217.2 Da    PI: 7.2513
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G26350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.27.2e-19421221499
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        +++p +fa++++g    s  + l+++sg++W++ +   +++ +  vl++GWkeFv+ang++e+D ++F+++g s+f   v +f+ 
  OBART03G26350.1  42 ESMIVPSRFANNFNGH--ISEVVNLKSPSGKTWSIGV--ANSDTGeLVLRSGWKEFVDANGVQENDCLLFRYSGVSSF--DVLIFDP 122
                      45899*****888666..6779***************..5555555***************************99999..8888875 PP
2B338.12.7e-122683401484
                      T-EE--HHH.HTT---..--SEEEEEETTS....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
               B3  14 grlvlpkkfaeehggkkeesktltledesg....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                      + + ++ +fa ++ g+ +  +++++e   g     +W v++  r +s++ + ++GW++F+++ngL + D+++F+l
  OBART03G26350.1 268 STVGVSPEFAGRYLGP-AMAREVVMERGGGggggDQWHVRFVRRESSRG-FHGTGWRRFARDNGLLAHDVCLFEL 340
                      5566778888888444.45678999998878999*******65555555.6788*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.9E-2328125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-2328128IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.00229123IPR003340B3 DNA binding domain
SMARTSM010199.9E-1132123IPR003340B3 DNA binding domain
CDDcd100172.50E-1840121No hitNo description
PfamPF023625.4E-1642121IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-14247341IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.79E-13247340IPR015300DNA-binding pseudobarrel domain
CDDcd100171.47E-10251340No hitNo description
SMARTSM010190.0095253360IPR003340B3 DNA binding domain
PROSITE profilePS5086310.898255357IPR003340B3 DNA binding domain
PfamPF023624.5E-10269340IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MGMLKIGKNC SVCKEWQEHC YWSHMADDCK HFLTYMVGDF TESMIVPSRF ANNFNGHISE  60
VVNLKSPSGK TWSIGVANSD TGELVLRSGW KEFVDANGVQ ENDCLLFRYS GVSSFDVLIF  120
DPSGCEKASP HFVENRGFGR EEKSAGAEGG GRDGDKNGHH QHQLEMTPHK NSSRCRSIPS  180
ACKRGLFSDE IEQDHREEKK EGDDEDEDED KDGEDRYYFC RHGGRVTEYN LSKGDKEEIS  240
RVPVPVEPGN PVLVKVIHAS HLLSSRYSTV GVSPEFAGRY LGPAMAREVV MERGGGGGGG  300
DQWHVRFVRR ESSRGFHGTG WRRFARDNGL LAHDVCLFEL RLVDGAGAGD RLRRRPRPTM  360
AVHVLRRVRG RFVLIR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1349354DRLRRR
2350356RLRRRPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0635060.0AK063506.1 Oryza sativa Japonica Group cDNA clone:001-116-F06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630283.10.0B3 domain-containing protein Os03g0622100
SwissprotQ10GM40.0Y3221_ORYSJ; B3 domain-containing protein Os03g0622100
TrEMBLA0A0D3FLD20.0A0A0D3FLD2_9ORYZ; Uncharacterized protein
STRINGOBART03G26350.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-28B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]