PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G26260.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 603aa    MW: 69120.1 Da    PI: 9.6862
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G26260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.52.9e-1997181598
                      -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +  s +++++ +++p+kf++++ggk   s+t+ le+++g+++ vk+  +k+ +++vl+ GW+ Fv+a++++e+D+++F+++++s+f  +v +++
  OBART03G26260.1  97 M--SANFEHS-MIIPNKFLDQFGGK--ISRTVELESPKGNVYVVKV--SKHMNKTVLQCGWEAFVDAHQIEENDSLLFRHIENSRF--TVLILD 181
                      4..5556655.***********999..888****************..*********************************99999..888776 PP
2B345.81.1e-14299397399
                      EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
               B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                      +++++s+v+++ + lv+ k++a ++   +++s+t+tl+   ++r+W  k+ +rk + +y+l + W +Fv+ n++kegD+++F+l+  + ++f+ 
  OBART03G26260.1 299 TTMKHSNVNSHhASLVIAKHYACAYF--PRTSQTITLKWhGKNRKWHPKFYIRKDQVGYILHGRWIDFVRHNHVKEGDICIFHLKnFNgRKFRA 390
                      678888888886789*******8887..557789999985778*******77888888*************************98666688888 PP

                      EEEEE-S CS
               B3  93 vvkvfrk 99 
                      +v+++r+
  OBART03G26260.1 391 TVHLLRE 397
                      8888875 PP
3B355.11.4e-175165991499
                      T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEEEE-S CS
               B3  14 grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr..sefelvvkvfrk 99 
                      +  +l ++fa+++  ++ e+ tltl +  +g+ W+vk+  r +sg   ++t GW++Fv++n+L++ D+++F+l+++  ++  ++v+++r+
  OBART03G26260.1 516 N--TLGRQFATRYL-PEGEQ-TLTLLTtGTGKAWQVKM--RPRSGDaRMFTLGWRDFVRDNRLQTEDICLFQLMKNseRGLAMTVHIIRH 599
                      3..7889***9993.33344.5555554999*******..777776689***********************996644556677777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.6E-2188185IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-2289189IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.77490183IPR003340B3 DNA binding domain
CDDcd100171.21E-1791181No hitNo description
SMARTSM010192.7E-1093183IPR003340B3 DNA binding domain
PfamPF023622.9E-1797181IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-18288385IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.76E-20292393IPR015300DNA-binding pseudobarrel domain
CDDcd100171.36E-19295386No hitNo description
SMARTSM010190.0016297398IPR003340B3 DNA binding domain
PROSITE profilePS5086311.293298398IPR003340B3 DNA binding domain
PfamPF023626.6E-14298397IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-20500600IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.37E-19501600IPR015300DNA-binding pseudobarrel domain
CDDcd100172.67E-12506598No hitNo description
SMARTSM010191.2E-8508600IPR003340B3 DNA binding domain
PfamPF023626.2E-16516599IPR003340B3 DNA binding domain
PROSITE profilePS5086312.576518600IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MTFSTPKLPL LSKSNQRLGQ PRSLTWPWEV GNSSGEFVHQ RAGKAQLLQR QISLQDDYSK  60
PRVHMAGQGS QMKKYCDCCK RYVDHSNGKM KCFHRQMSAN FEHSMIIPNK FLDQFGGKIS  120
RTVELESPKG NVYVVKVSKH MNKTVLQCGW EAFVDAHQIE ENDSLLFRHI ENSRFTVLIL  180
DSNGCEKVFS CSGKRRASGV QERNADPIDV SSSTHDDTAQ SSGGERFARS ESGSDSQHRE  240
EAKESSSSEH ESSYDLVDPQ IAPMPGYVLS RGTNLSEAHE EKLDMLVQEI RPEIPLYVTT  300
MKHSNVNSHH ASLVIAKHYA CAYFPRTSQT ITLKWHGKNR KWHPKFYIRK DQVGYILHGR  360
WIDFVRHNHV KEGDICIFHL KNFNGRKFRA TVHLLRETIP HSFGALHIPK RFESRNGRMR  420
LKMTDDRRVS STECRRGTME PSTTNVKKEA DNEQCNNGQG KRQEPLNFDV SVGSSKPYLT  480
ADRVSLTEEQ FRKVEENVHS IQSEGPIYVS IMNKSNTLGR QFATRYLPEG EQTLTLLTTG  540
TGKAWQVKMR PRSGDARMFT LGWRDFVRDN RLQTEDICLF QLMKNSERGL AMTVHIIRHS  600
ERS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004510.0AK100451.1 Oryza sativa Japonica Group cDNA clone:J023090P20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630232.20.0LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0620500-like
SwissprotQ851W40.0Y3205_ORYSJ; B3 domain-containing protein Os03g0620500
TrEMBLA0A0D3FLC20.0A0A0D3FLC2_9ORYZ; Uncharacterized protein
STRINGOBART03G26260.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-15B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]