PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G26240.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 519aa    MW: 59188.1 Da    PI: 8.7358
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G26240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.71.6e-1635116997
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       ++  + +++p+kf++++gg    s+t+ l +++g ++ vk+  + + ++++l+ GW+ Fv+a++++e+D+++F+++++s+f   v ++
  OBART03G26240.1  35 ANF-GHSMTIPNKFLDHFGGT--LSRTIELVSPKGIVYIVKV--TEHMNKTILQCGWEAFVDAHHIEENDSLLFRHIENSRF--EVLIL 116
                      334.456********888877..899****************..*********************************99999..66665 PP
2B362.76e-20248347198
                      EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 
                      f+ ++++s+v+++ ++lv+pk++a++h   + es+t+tl+   ++++W   + +rk +++y+l ++Wk+Fv++n++kegD+++F+l+  +  ef
  OBART03G26240.1 248 FVAIMKHSNVNSRrACLVIPKRYASAHF--PLESQTITLQRqGKNKKWYPMFYIRKDGSGYMLYGCWKNFVRDNHVKEGDMCIFHLTkFTgGEF 339
                      6677888888887788***********6..446779999985666****99977999999*************************874445666 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                        +v+++r
  OBART03G26240.1 340 GATVHLLR 347
                      66777666 PP
3B359.27.2e-19423515899
                      -HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
               B3   8 sdvlks..grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                      s+v++    ++++ ++fa+++ +++ e++   l++ +++ W+vk+  r +sg   ++t+GW++Fv++n+L+  D+++F+l+++ s+ +++v+++
  OBART03G26240.1 423 SNVGTDglYIIIFGRQFATRY-LPEGEQTLTLLMTGKSNAWQVKM--RPRSGDaQMITTGWRHFVHDNHLQIEDICLFQLMNDeSKLTMTVHII 513
                      555555112346689***999.3444455566777899*******..77777779**************************998********** PP

                      -S CS
               B3  98 rk 99 
                      r+
  OBART03G26240.1 514 RR 515
                      98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.49E-2025123IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.12526119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-1926121IPR015300DNA-binding pseudobarrel domain
CDDcd100173.30E-1527117No hitNo description
SMARTSM010199.9E-829119IPR003340B3 DNA binding domain
PfamPF023627.6E-1534115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.1E-21240333IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-24242335IPR015300DNA-binding pseudobarrel domain
CDDcd100174.45E-22246347No hitNo description
PfamPF023624.3E-20248348IPR003340B3 DNA binding domain
SMARTSM010191.2E-7248350IPR003340B3 DNA binding domain
PROSITE profilePS5086313.197249349IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.0E-22408516IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-19409516IPR015300DNA-binding pseudobarrel domain
CDDcd100176.96E-15414514No hitNo description
PROSITE profilePS5086311.801416516IPR003340B3 DNA binding domain
SMARTSM010194.7E-6416516IPR003340B3 DNA binding domain
PfamPF023629.3E-19420516IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MAGQGSQKKK SCDWSKRYVD HLNGKMKCFH LQMSANFGHS MTIPNKFLDH FGGTLSRTIE  60
LVSPKGIVYI VKVTEHMNKT ILQCGWEAFV DAHHIEENDS LLFRHIENSR FEVLILDSDG  120
CEKVFTWAGI KKTSSVQERN VAPVDISRST HDETTQSSGS KKFVRCQRAS DSQRGKTAKL  180
AETSSSGESG EEGTDSSTFE DESSYELDDP QMPPGRNYVL SRWTSLSEAQ EEKVDMLVQD  240
IQPEIPVFVA IMKHSNVNSR RACLVIPKRY ASAHFPLESQ TITLQRQGKN KKWYPMFYIR  300
KDGSGYMLYG CWKNFVRDNH VKEGDMCIFH LTKFTGGEFG ATVHLLRETK SGSLGSFHTS  360
HKRFDLRDGR TWPKVTGARR VSSRPYLTAD RVSLTEEQVR KVEEVVHSIQ SEGPMYVSIM  420
NKSNVGTDGL YIIIFGRQFA TRYLPEGEQT LTLLMTGKSN AWQVKMRPRS GDAQMITTGW  480
RHFVHDNHLQ IEDICLFQLM NDESKLTMTV HIIRRNEKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1021690.0AK102169.1 Oryza sativa Japonica Group cDNA clone:J033086H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628609.10.0B3 domain-containing protein Os03g0620400 isoform X1
SwissprotQ851W50.0Y3204_ORYSJ; B3 domain-containing protein Os03g0620400
TrEMBLA0A0D3FLC00.0A0A0D3FLC0_9ORYZ; Uncharacterized protein
STRINGOBART03G26240.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-18B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]