PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G11470.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 303aa    MW: 30157.6 Da    PI: 7.3659
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G11470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.3e-1894143255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                       ykGVr ++ +g+Wv+eIr p     +  +r++lg++ t+e Aa+a++aa ++l+g
  OBART03G11470.1  94 PYKGVRMRS-WGSWVSEIRAP-----HqkRRIWLGSYATPEAAARAYDAALLCLKG 143
                      59****998.**********7.....335************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575128No hitNo description
SMARTSM003806.6E-3494157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-2994153IPR001471AP2/ERF domain
PROSITE profilePS5103221.91894151IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-1995152IPR016177DNA-binding domain
PRINTSPR003677.8E-895106IPR001471AP2/ERF domain
PfamPF008477.0E-1195143IPR001471AP2/ERF domain
CDDcd000187.57E-1995153No hitNo description
PRINTSPR003677.8E-8117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MVKNTSNKCI AAAGATAAAG LGGGAASCSG GGGDRKVTTA AAAALAVRPT RATVHAAAGA  60
TAAAGLGGGA ASCSGGGGDR KVTTAAAAAL AVRPYKGVRM RSWGSWVSEI RAPHQKRRIW  120
LGSYATPEAA ARAYDAALLC LKGSDAVLNF PSSASSRRRL DIHRGGTDSA AGDMSPRSIQ  180
RVAAAAAAAF DAAAAGVVVD ESCSCSAEAM SSTPTSRATS LSTLGSSGGG DVLDHATTPS  240
SSSSAAANVC SPPLEGDHEL WTELDAFASP KFMDLMAAGG TAFSSPWEEP EEDGELMRLW  300
SFC
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00156DAPTransfer from AT1G21910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1352060.0AC135206.3 Oryza sativa Japonica Group chromosome 3 clone OJ1041F02, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630150.11e-127ethylene-responsive transcription factor ERF013
TrEMBLA0A0D3FGI80.0A0A0D3FGI8_9ORYZ; Uncharacterized protein
STRINGOBART03G11470.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108303040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.14e-25ERF family protein