PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G06100.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 283aa    MW: 30334.5 Da    PI: 4.536
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G06100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-1752101255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp+    +  r++lg+f  ae Aa a++ a+++++g
  OBART03G06100.1  52 QYRGVRRRP-WGKWAAEIRDPV----KgIRVWLGTFTNAEAAALAYDDAARAIRG 101
                      69*******.**********75....44***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.43E-1751109No hitNo description
Gene3DG3DSA:3.30.730.109.9E-3152110IPR001471AP2/ERF domain
PfamPF008473.4E-1052101IPR001471AP2/ERF domain
PROSITE profilePS5103223.39352109IPR001471AP2/ERF domain
SMARTSM003804.9E-3452115IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2152110IPR016177DNA-binding domain
PRINTSPR003671.5E-125364IPR001471AP2/ERF domain
PRINTSPR003671.5E-1291111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MAMDRDANCA VQRTTELELD RKAARLEGIP RKARKAAAAA AAASSRRRKP AQYRGVRRRP  60
WGKWAAEIRD PVKGIRVWLG TFTNAEAAAL AYDDAARAIR GDRAKLNFPS ATTPDTRKRG  120
RATAAAAPAV KATPVINLVE EEEVAAAMAS IKYEPETSEN SESNALPDFS WQGMSASDEF  180
AVAAAALDSD DDLAKKRPRT EPEDTTTTTD SGSGDDTDAL FDTLLFADQY NYFNGGAYES  240
LDSLFSADAV QTTAAAAAAD QGMGLWSFDD GCCLVDVEAS LSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2149109263ATERF1
3gcc_A4e-2149109263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14658RRKPAQYRGVRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632219.11e-107ethylene-responsive transcription factor ERF073
TrEMBLA0A0D3FEP00.0A0A0D3FEP0_9ORYZ; Uncharacterized protein
STRINGOBART03G06100.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.11e-16ERF family protein