PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G06050.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 326aa    MW: 35883.1 Da    PI: 6.1932
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G06050.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.2e-19120170155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GVr+++ +gr++AeIrdp++    +r++lg++g+aeeAa a+++ +++++g
  OBART03G06050.2 120 SKYRGVRRRP-SGRFAAEIRDPKK---GRRVWLGTYGSAEEAAMAYDREARRIRG 170
                      89********.7*********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.15E-28120178No hitNo description
PfamPF008471.5E-12120170IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-21120179IPR016177DNA-binding domain
SMARTSM003802.0E-32121184IPR001471AP2/ERF domain
PROSITE profilePS5103221.97121178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-28121178IPR001471AP2/ERF domain
PRINTSPR003672.0E-7122133IPR001471AP2/ERF domain
PRINTSPR003672.0E-7144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MCGGAILADF TPARVPRRLT AAELLPVTPT PPAAERRTTR KRKSDVDFEA EFELFEDDDD  60
DDEFELSDDG DESLAVSCVS SPKSKAVPSF SFSSDVSSSS RPRRRVAAAA AGRRKASKKS  120
KYRGVRRRPS GRFAAEIRDP KKGRRVWLGT YGSAEEAAMA YDREARRIRG KGARLNFPRD  180
GDGSPRRSND RPCWTIDLNL PAAAVSGDDD DAMTVDAADA DAGSAGRAAA YADQEALSAA  240
KCKIKQCPRD EQMASATPEL MEEDASSSRN MVPLSMALQL QYAAMIAECD REMEEIAAVE  300
RDLERRRRQV FERRGHLVRQ ASLLLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19117178163ATERF1
3gcc_A2e-19117178163ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13843TRKRKS
2113128RKASKKSKYRGVRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3048400.0AJ304840.1 Oryza sativa mRNA for ethylene responsive protein (ebp-89 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632275.10.0ethylene-responsive transcription factor RAP2-12
TrEMBLA0A0D3FEN40.0A0A0D3FEN4_9ORYZ; Uncharacterized protein
TrEMBLI1P8880.0I1P888_ORYGL; Uncharacterized protein
STRINGORGLA03G0058400.10.0(Oryza glaberrima)
STRINGOBART03G06050.20.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136642229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.12e-22ERF family protein