PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G06050.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 307aa    MW: 33985.9 Da    PI: 5.4227
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G06050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.6e-19101151155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GVr+++ +gr++AeIrdp++    +r++lg++g+aeeAa a+++ +++++g
  OBART03G06050.1 101 SKYRGVRRRP-SGRFAAEIRDPKK---GRRVWLGTYGSAEEAAMAYDREARRIRG 151
                      89********.7*********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-21101160IPR016177DNA-binding domain
PfamPF008471.4E-12101151IPR001471AP2/ERF domain
CDDcd000181.02E-27101159No hitNo description
SMARTSM003802.0E-32102165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-28102159IPR001471AP2/ERF domain
PROSITE profilePS5103221.97102159IPR001471AP2/ERF domain
PRINTSPR003671.8E-7103114IPR001471AP2/ERF domain
PRINTSPR003671.8E-7125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MCGGAILADF TPARVPRRLT AAELLPVTPT PPAAERRTTR KRKSDVDFEA EFELFEDDDD  60
DDEFELSDDG DEISSDVSSS SRPRRRVAAA AAGRRKASKK SKYRGVRRRP SGRFAAEIRD  120
PKKGRRVWLG TYGSAEEAAM AYDREARRIR GKGARLNFPR DGDGSPRRSN DRPCWTIDLN  180
LPAAAVSGDD DDAMTVDAAD ADAGSAGRAA AYADQEALSA AKCKIKQCPR DEQMASATPE  240
LMEEDASSSR NMVPLSMALQ LQYAAMIAEC DREMEEIAAV ERDLERRRRQ VFERRGHLVR  300
QASLLLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1998159163ATERF1
3gcc_A2e-1998159163ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13843TRKRKS
294109RKASKKSKYRGVRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3048400.0AJ304840.1 Oryza sativa mRNA for ethylene responsive protein (ebp-89 gene).
GenBankAK0731330.0AK073133.1 Oryza sativa Japonica Group cDNA clone:J033023E13, full insert sequence.
GenBankAY3234780.0AY323478.1 Oryza sativa (japonica cultivar-group) ap2 domain containing protein (cap2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632275.11e-154ethylene-responsive transcription factor RAP2-12
TrEMBLA0A0D3FEN30.0A0A0D3FEN3_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0NQL70.0A0A0E0NQL7_ORYRU; Uncharacterized protein
STRINGORGLA03G0058400.11e-158(Oryza glaberrima)
STRINGOBART03G06050.21e-158(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.19e-25ERF family protein