PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART03G02440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GATA | ||||||||
Protein Properties | Length: 271aa MW: 28960.5 Da PI: 6.6127 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 62.9 | 3.8e-20 | 188 | 221 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C+tt+Tp+WR gpdg++tLCnaCG++yr + OBART03G02440.1 188 CGHCQTTETPQWRVGPDGPSTLCNACGIRYRMDH 221 9******************************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 7.13E-14 | 180 | 230 | No hit | No description |
PROSITE profile | PS50114 | 12.558 | 182 | 220 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.2E-18 | 182 | 236 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.3E-15 | 186 | 221 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 9.84E-16 | 187 | 235 | No hit | No description |
Pfam | PF00320 | 6.3E-18 | 188 | 222 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MLKPTRYISL HDVVAFDFVD GDVPFDDLVD GEGLCCPDDP FEEVMRCLSA VDDPFLAAFK 60 LDCSPPTPAA DADVDSRSEE HMHADVGGGL DLQRAVGGGD EKAGTPSTID DVPWLQASAV 120 ARKPRRAPAA VRKRVWSLVS PQLATAAAAA VDNSRDEVSS GGGGGGEGGE HCSRPAKRRR 180 KCGEEKRCGH CQTTETPQWR VGPDGPSTLC NACGIRYRMD HLLPEYRPST SPGFGSDGYS 240 NRHSKVVKLR EKKRKKAMLA ATATALTSGP V |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 251 | 255 | KKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC098693 | 0.0 | AC098693.3 Oryza sativa Japonica Group chromosome 3 clone OJ1004C08, complete sequence. | |||
GenBank | AP000615 | 0.0 | AP000615.1 Oryza sativa Japonica Group genomic DNA, chromosome 3, clone:P0043E01. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629442.1 | 1e-172 | GATA transcription factor 6 | ||||
TrEMBL | A0A0D3FDD6 | 0.0 | A0A0D3FDD6_9ORYZ; Uncharacterized protein | ||||
STRING | OBART03G02440.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12777 | 24 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08010.2 | 2e-19 | GATA transcription factor 11 |