PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART03G01740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 185aa MW: 19628.4 Da PI: 7.1111 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.9 | 1.8e-13 | 2 | 50 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h ++Er+RR+ +N+ ++ Lr+l+P++ + ++ + a+++ A++Y+k+L+ OBART03G01740.1 2 THIAVERNRRRLMNDHLASLRSLIPSN---YIPRGDQATVVGGAIDYVKQLE 50 8**************************...9*******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.424 | 1 | 49 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.07E-14 | 1 | 59 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.27E-12 | 1 | 50 | No hit | No description |
Pfam | PF00010 | 1.1E-10 | 2 | 50 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-12 | 2 | 53 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.9E-10 | 4 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MTHIAVERNR RRLMNDHLAS LRSLIPSNYI PRGDQATVVG GAIDYVKQLE QQLVALQAAA 60 AERSGVGVVA TAATAASDGV FVSPQYTSYS EARGGSGVDV EATAAVGGHV RVRVAGRRWT 120 GRLLRAVAAM EDLRLTVLHL AVTSVGHDAV VYCFNLKMEE GCEMATADEV ATVVHQIFAY 180 AGACC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210491 | 0.0 | AC210491.1 Oryza glaberrima clone OG_BBa0088K23, complete sequence. | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629439.2 | 1e-129 | transcription factor bHLH57 | ||||
TrEMBL | A0A0D3FD53 | 1e-131 | A0A0D3FD53_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9Z1C8 | 1e-129 | A0A0D9Z1C8_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GB93 | 1e-129 | A0A0E0GB93_ORYNI; Uncharacterized protein | ||||
STRING | OGLUM03G01710.1 | 1e-130 | (Oryza glumipatula) | ||||
STRING | ONIVA02G30660.1 | 1e-130 | (Oryza nivara) | ||||
STRING | OBART03G01740.1 | 1e-131 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7957 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46810.1 | 2e-38 | bHLH family protein |