PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART03G01380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 72aa MW: 8165.22 Da PI: 10.162 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.4 | 1.8e-13 | 24 | 63 | 1 | 45 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAaka 45 + y+G+r + +g+Wv+eIr+p gk+ r++lg++ t+e+Aa+a OBART03G01380.1 24 PVYRGIRLR--SGKWVSEIREP---GKSSRIWLGTYPTPEMAAAA 63 68****986..5*********8...557***************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.5E-7 | 24 | 63 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-11 | 25 | 64 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 12.839 | 25 | 63 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-10 | 25 | 72 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.0E-17 | 25 | 63 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.98E-14 | 26 | 63 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 72 aa Download sequence Send to blast |
MDRDESLGTQ PLTGRRVRAD TRHPVYRGIR LRSGKWVSEI REPGKSSRIW LGTYPTPEMA 60 AAANLGHLAY EE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210486 | 1e-101 | AC210486.3 Oryza glaberrima clone OG_BBa0079C16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880266.1 | 1e-38 | ethylene-responsive transcription factor ERF027 | ||||
Refseq | XP_025880267.1 | 1e-38 | ethylene-responsive transcription factor ERF027 | ||||
Swissprot | Q9LYD3 | 2e-17 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A0D3FD13 | 3e-45 | A0A0D3FD13_9ORYZ; Uncharacterized protein | ||||
STRING | OBART03G01380.1 | 5e-46 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 8e-20 | ERF family protein |
Publications ? help Back to Top | |||
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