PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G37700.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 560aa    MW: 61786.4 Da    PI: 4.5931
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G37700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.11.8e-49161521128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya.........tgkrknratksgyW 83 
                      l+pGfrFhPtdeelv++yL++++ g++l++ ++i+evd+y++ePwdLp  +++++++ +wyfF++ d+k +          g+r+nrat +gyW
  OBART02G37700.1  16 LAPGFRFHPTDEELVSYYLRRRILGRRLRI-DAIAEVDLYRLEPWDLPslSRIRSRDAQWYFFARLDRKVTgagaggrggPGNRTNRATPRGYW 108
                      579***************************.99***************5448999999***********99777777665567*********** PP

              NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k+tgkd++v++ +g+lvg+kktLvf++grapkg++t+Wvmheyrl
  OBART02G37700.1 109 KTTGKDRDVHH-RGKLVGMKKTLVFHSGRAPKGQRTNWVMHEYRL 152
                      ***********.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-5211162IPR003441NAC domain
PROSITE profilePS5100551.10516191IPR003441NAC domain
PfamPF023653.8E-2718152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MSQSPPDSSS AAAVPLAPGF RFHPTDEELV SYYLRRRILG RRLRIDAIAE VDLYRLEPWD  60
LPSLSRIRSR DAQWYFFARL DRKVTGAGAG GRGGPGNRTN RATPRGYWKT TGKDRDVHHR  120
GKLVGMKKTL VFHSGRAPKG QRTNWVMHEY RLLDADGTQT QEYQPEITPV RAQGSNEETN  180
GGGYSCDVFS LDEILQEPEN VCKNEEQNAI DDKFTIGELS GYPRQDDGYV GENGPVNWID  240
PSNGDNTNWP LRAYSTQNHV NGTLSADGFF DTVNGTNSYS GQQQVCPSDN QNLYLQDDGL  300
TSSHQVGDNM PFYDASSNHK WVDGKDDYLN LNDLLYPPAE NQPLFDAGDD LMAYFDATED  360
DFKFDIMGTE DSNSQLPDMS NFVQKDDNNN KFTLDGISNT ALYGASSSGS HGNMYPDTAV  420
PDMPMDDTVD KSFGKRLASM LGSIPAPPAM ASEFPPSTGK SVVPLSAVNP SSSIRVTAGI  480
IQLGGITFTG STERLQKNGD FNLLLSFTVE GDVSTKSIGF EPDTQMSTTP MVLRSGMYLF  540
FVSAMILMLS YKVGLCIYSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-4371526140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1021730.0AK102173.1 Oryza sativa Japonica Group cDNA clone:J033086I18, full insert sequence.
GenBankAY2244330.0AY224433.1 Oryza sativa (japonica cultivar-group) isolate 20620 NAC-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624689.10.0NAC domain-containing protein 78 isoform X1
RefseqXP_015624691.10.0NAC domain-containing protein 78 isoform X2
TrEMBLA0A0D3FC840.0A0A0D3FC84_9ORYZ; Uncharacterized protein
STRINGOBART02G37700.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129312833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.12e-45NAC domain containing protein 53