PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G34510.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 308aa    MW: 33662.7 Da    PI: 11.3369
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G34510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.71.6e-32135191158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      d p+YVN+KQy++Il+RRq Rakle+++kl  k+rkpylheSRh+hA++R+Rg+gGrF
  OBART02G34510.1 135 DGPIYVNPKQYHGILRRRQLRAKLEAQNKL-VKTRKPYLHESRHRHAMKRARGTGGRF 191
                      57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.0E-37133194IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.735134194IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.6E-28137191IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.6E-24137159IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.6E-24168191IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MMQSRGAAAE ATAGRSRGGC RRSEQQQLLR AAEAPREEAR GSHASPLIIF LFLRLQRRTV  60
DGPMRSTLTF DNNHSVVPSQ NIDYGQPMAC ISYPYNDSGS GVWASYSSRS VFHPQIVGGG  120
TSPRVPLPSL EIADDGPIYV NPKQYHGILR RRQLRAKLEA QNKLVKTRKP YLHESRHRHA  180
MKRARGTGGR FLNTKQLQLQ QQSHTTSTKT TTDSQNSSGS VHLRLGGGAI GDQTPFPFKA  240
MDSQANIKRA AASASTFTVT SAAQKDDAFF DRHGHHLSSF SGHFGQASAQ GGVGSMHNGS  300
QQRVPAMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-21135196263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175184RHRHAMKRAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3185740.0AK318574.1 Oryza sativa Japonica Group cDNA, clone: J090045B17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623432.10.0nuclear transcription factor Y subunit A-4
TrEMBLA0A0D3FB490.0A0A0D3FB49_9ORYZ; Uncharacterized protein
STRINGOBART02G34510.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132762833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.16e-31nuclear factor Y, subunit A5