PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G25380.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 694aa    MW: 76425.4 Da    PI: 6.522
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G25380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58.1e-19129179256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  OBART02G25380.1 129 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 179
                      59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.94E-31128188No hitNo description
Gene3DG3DSA:3.30.730.105.4E-32129187IPR001471AP2/ERF domain
SMARTSM003805.9E-39129192IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23129187IPR016177DNA-binding domain
PROSITE profilePS5103222.998129186IPR001471AP2/ERF domain
PfamPF008474.7E-12130179IPR001471AP2/ERF domain
PRINTSPR003671.7E-10130141IPR001471AP2/ERF domain
PRINTSPR003671.7E-10152168IPR001471AP2/ERF domain
SMARTSM010412.1E-38245585IPR004328BRO1 domain
Gene3DG3DSA:1.25.40.2801.9E-61338582IPR004328BRO1 domain
PfamPF030979.6E-59338578IPR004328BRO1 domain
PROSITE profilePS5118024.72341581IPR004328BRO1 domain
SuperFamilySSF500909.89E-24614692IPR008990Electron transport accessory protein-like domain
ProDomPD0150342.0E-40614692IPR004207Ferredoxin thioredoxin reductase, alpha chain
Gene3DG3DSA:2.30.30.503.3E-31614693No hitNo description
PfamPF029416.3E-26615688IPR004207Ferredoxin thioredoxin reductase, alpha chain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015979Biological Processphotosynthesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MSLPNQPPSS RHIFPFAYDP SPGAAAPRLL PLLQYSSLYP QPLLPQQQSP LQNQQMISFG  60
SSQQQQQQPQ FGAASPLFPP QFLPPEEQQR LLLRYWSEAL NLSPRGVRGG ALPPSLYQHL  120
LRAPGPPKLY RGVRQRHWGK WVAEIRLPRN RTRLWLGTFD TAEDAAMAYD REAFKLRGEN  180
ARLNFPDLFL GKGRTGGSGR TSASAAASCS SSSSAPPTPD ESHTQQAQPQ PQQPTEESSN  240
TEPKPLLFVA EQDGIPEPEL NPQLQTAEQH GSDGNTVMFQ PSVTSGGVWG PADEAWFSAW  300
GPGSSVWDYD MDSAHGLLLQ SRLAGFVVEC SRPHLRRTAA SLRFEKAAVV FNVGAASSRI  360
AAAVDRAAEG GVKAACGEFQ RAAGAFRAAG EMMEGEEEDT VDMGPEASAM LERLMLAQAQ  420
ECCFERALAA GTSSAACSKV AKQAALYYEE AYASLVIPPL QNHFERSWVA HILLKAALFN  480
AEASYRYAIE LHEKTEIGEE IARLQFGINA IVDAKKAVRG APGSLYDAAS RLEQDMNQNL  540
ERALNENNRI YLLRVPAAKL LAPLPAASLV RSASLSEILD VKTETGNQSS QHGWFIYMPL  600
NILQEYYEAA VAPKIGKRVR VTAPVRVYHV MKAPDLDIKG MEGVVKQYVA VWKGKRITAN  660
FPFKVEFHLS VEGQDKAVRF FVHLREDEFE FIDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3rau_A2e-24341571111342Tyrosine-protein phosphatase non-receptor type 23
3rau_B2e-24341571111342Tyrosine-protein phosphatase non-receptor type 23
5mjy_A2e-24341571109340Tyrosine-protein phosphatase non-receptor type 23
5mjy_B2e-24341571109340Tyrosine-protein phosphatase non-receptor type 23
5mjy_C2e-24341571109340Tyrosine-protein phosphatase non-receptor type 23
5mjy_D2e-24341571109340Tyrosine-protein phosphatase non-receptor type 23
5mjz_A2e-24341571109340Tyrosine-protein phosphatase non-receptor type 23
5mjz_B2e-24341571109340Tyrosine-protein phosphatase non-receptor type 23
5mk0_A2e-24341571109340Tyrosine-protein phosphatase non-receptor type 23
5mk0_C2e-24341571109340Tyrosine-protein phosphatase non-receptor type 23
5mk1_A2e-24341571109340Tyrosine-protein phosphatase non-receptor type 23
5mk1_B2e-24341571109340Tyrosine-protein phosphatase non-receptor type 23
5mk1_C2e-24341571109340Tyrosine-protein phosphatase non-receptor type 23
5mk1_D2e-24341571109340Tyrosine-protein phosphatase non-receptor type 23
5mk2_A2e-24341571109340Tyrosine-protein phosphatase non-receptor type 23
5mk2_B2e-24341571109340Tyrosine-protein phosphatase non-receptor type 23
5mk3_A2e-24341571109340Tyrosine-protein phosphatase non-receptor type 23
5mk3_B2e-24341571109340Tyrosine-protein phosphatase non-receptor type 23
5mk3_C2e-24341571109340Tyrosine-protein phosphatase non-receptor type 23
5mk3_D2e-24341571109340Tyrosine-protein phosphatase non-receptor type 23
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429860.0AK242986.1 Oryza sativa Japonica Group cDNA, clone: J090094O16, full insert sequence.
GenBankAP0047680.0AP004768.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0010C01.
GenBankAP0055130.0AP005513.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0014E22.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3F8150.0A0A0D3F815_9ORYZ; Uncharacterized protein
STRINGOBART02G25380.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1180622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.16e-36ERF family protein