PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G22890.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 1041aa    MW: 117663 Da    PI: 9.6045
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G22890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.72.7e-1097810353595
                       EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95  
                        ++l+d+  r W v +    k+  + +t+GWk F+ an+L++gD++ F  +  +e el ++
  OBART02G22890.1  978 VVILKDPMRRLWPVFY--HDKPVFVGFTAGWKPFAAANNLQAGDVCKFVKEM-DEDELAFQ 1035
                       689*************..9***9*************************9443.44444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.489346439IPR003340B3 DNA binding domain
SuperFamilySSF1019361.9E-16348441IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-14349439IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.0E-4349439IPR003340B3 DNA binding domain
CDDcd100173.29E-7361436No hitNo description
SMARTSM010190.039511040IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-129691040IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-119721040IPR015300DNA-binding pseudobarrel domain
CDDcd100171.98E-139761040No hitNo description
PfamPF023621.9E-79771037IPR003340B3 DNA binding domain
PROSITE profilePS5086310.2789791041IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1041 aa     Download sequence    Send to blast
MDDAVRGQGC VGRLRSFNKT KKKNRNCSDD MRNGDDEEKK KCSHHDMKKN LRNDANEEKR  60
KSSDDMRDGD FEEKKKCSRH DMKKNLRNDA XGEXRKSXDD MRDGDDEEKK KRSRHDMKKN  120
SRNDADEEKR KRKRKRKRKC SDDLKKSVLN DASKEATSHS DWRKNRKAGS DAEQRGKKLL  180
NGDKKAKSRK VTTPFFEKMR KIKMQRTSNQ NGEKNMKSDG DSYKKTVPLS VNKGKMEKDG  240
TNKRTLSNTL VAKERKMRPS DSMEMKMKKK KRDASFVQPD ERTAQTFSTK NKEKKRKAPS  300
TPLKREQKER VASSDNKKET KKACIVAIGN EKKNCRDGKK KKRKAAFAFF KFVRDEFEEL  360
LFIPPAVAPS LKDLIDRHVY LEDSEGKCSK IRLSVVDGSL AFYEGWNSFV SEHCIKWGEF  420
LLFEYTPEST FSVRVFGIDS CERLHFSVKS GGKGAVKKRK ERHTLSDDLI SHYNGQYQDS  480
EDIHDDPNVS GESPRSKEPK IAVDAEIGTR NLVAKSINAA SETQDSERVE SGIGYGSLGA  540
LGNKVRNLSN GECDTRSDSV FCIQEKTRRS EVIIISDEAY STQVDEDTMK QTAPSEASEI  600
HHVTINTQKD LERVVDGVCC ESSVALNNKM GNLILGEPKN KNISPACSTE KTNGSEITPT  660
TGAIPLTQEN IDTVKLNTLS CFEEDRSTTR ESELAAAIPT ISETHDSDKD LGQKHQRNSV  720
QVNSIIAVDK YLNDSEMNIS GNIFRIYEAP AGTRCLEKWK RGIVNGRAAL DDIGQVRPEK  780
TQKAGEKLVG NCGAMGESPV DLRIESDVTD TCLKPILNIP IEELSILDSV SISKCGRSRT  840
EVNHLFNQKG ATVQLQTKKE PLKPTGSSGN RKGDKIAVSV NRVFAHQSEL QIPQQENGNF  900
TSCVTPVALL PAKAELLDLD DHSLQFCIPS TIQKWLVFSY SVVQWMQFVE FMLIAVRAEL  960
PKSLPITCRQ KGRYDRNVVI LKDPMRRLWP VFYHDKPVFV GFTAGWKPFA AANNLQAGDV  1020
CKFVKEMDED ELAFQVYITR K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109131KKRSRHDMKKNSRNDADEEKRKR
2130138KRKRKRKRK
3132138KRKRKRK
4133138RKRKRK
5338343KKKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1219900.0AK121990.1 Oryza sativa Japonica Group cDNA clone:J033109I02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624189.10.0B3 domain-containing protein Os02g0598200
RefseqXP_015624190.10.0B3 domain-containing protein Os02g0598200
SwissprotQ6K5K20.0Y2982_ORYSJ; B3 domain-containing protein Os02g0598200
TrEMBLA0A0D3F7680.0A0A0D3F768_9ORYZ; Uncharacterized protein
STRINGOBART02G22890.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122722730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.12e-11B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]