PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART02G21850.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 376aa MW: 40624.8 Da PI: 7.2026

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART02G21850.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.9	1.9e-53	39	165	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL +k+++ +++++ e+d++k+ePwdLp++++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkd+e+++ OBART02G21850.1 39 LPPGFRFHPTDEELITHYLLRKAADPAGFAARAVGEADLNKCEPWDLPSRATMGEKEWYFFCVKDRKYPTGLRTNRATESGYWKATGKDREIFR 132 79*******************9999666689***********988899************************************ PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kktLvfy+grap+g kt Wvmheyr+ OBART02G21850.1 133 -GKALVGMKKTLVFYTGRAPRGGKTGWVMHEYRI 165 .99***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-65	27	188	IPR003441	NAC domain
PROSITE profile	PS51005	59.693	39	188	IPR003441	NAC domain
Pfam	PF02365	3.0E-29	40	165	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MRLARQQQQQ QVVVAATMEH DVHHHRQMMQ QQQQQEMDLP PGFRFHPTDE ELITHYLLRK 60 AADPAGFAAR AVGEADLNKC EPWDLPSRAT MGEKEWYFFC VKDRKYPTGL RTNRATESGY 120 WKATGKDREI FRGKALVGMK KTLVFYTGRA PRGGKTGWVM HEYRIHGKHA AANSKQDQEW 180 VLCRVFKKSL ELAPSAAAAV GRRGAGAGTD VGPSSMPMAD DVVGLAPCAL PPLMDVSGGG 240 GGAGTASLSA TAGAAAAPPP AHVTCFSNAL EGQFLDTPYL LPAADPADHL AMSSASPFLE 300 ALQMQYVQDA AAAGGAGMVH ELLMGGGWYC NKGERERLSG ASQDTGLTSS EVNPGEISSS 360 SRQQRMDHHD ASLWAY

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MRLARQQQQQ QVVVAATMEH DVHHHRQMMQ QQQQQEMDLP PGFRFHPTDE ELITHYLLRK  60
AADPAGFAAR AVGEADLNKC EPWDLPSRAT MGEKEWYFFC VKDRKYPTGL RTNRATESGY  120
WKATGKDREI FRGKALVGMK KTLVFYTGRA PRGGKTGWVM HEYRIHGKHA AANSKQDQEW  180
VLCRVFKKSL ELAPSAAAAV GRRGAGAGTD VGPSSMPMAD DVVGLAPCAL PPLMDVSGGG  240
GGAGTASLSA TAGAAAAPPP AHVTCFSNAL EGQFLDTPYL LPAADPADHL AMSSASPFLE  300
ALQMQYVQDA AAAGGAGMVH ELLMGGGWYC NKGERERLSG ASQDTGLTSS EVNPGEISSS  360
SRQQRMDHHD ASLWAY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-55	25	188	3	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-55	25	188	3	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-55	25	188	3	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-55	25	188	3	165	NO APICAL MERISTEM PROTEIN
4dul_A	2e-55	25	188	3	165	NAC domain-containing protein 19
4dul_B	2e-55	25	188	3	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT834765	0.0	CT834765.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA021O03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623389.1	0.0	NAC domain-containing protein 92 isoform X1
Swissprot	Q9FLJ2	4e-88	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0D3F6U9	0.0	A0A0D3F6U9_9ORYZ; Uncharacterized protein
STRING	OBART02G21850.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2730	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	5e-84	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]