PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G09680.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 240aa    MW: 24755.5 Da    PI: 4.826
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G09680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.26.5e-164486147
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47
                     + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++
  OBART02G09680.1 44 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHD 86
                     57*****998.**********843...6*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.54E-254496No hitNo description
PfamPF008471.3E-104486IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-174596IPR016177DNA-binding domain
PROSITE profilePS5103219.33545102IPR001471AP2/ERF domain
SMARTSM003809.7E-2845101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-244596IPR001471AP2/ERF domain
PRINTSPR003673.2E-104657IPR001471AP2/ERF domain
PRINTSPR003673.2E-106884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MPELEVCSPA SSGGASPPES PVEGRRGGGG GEKRGRSGDG GRHPSYRGVR MRAWGKWVSE  60
IREPRKKSRI WLGTFPTPEM AARAHDGPAA VLNFPDMAAS LPRPASASPR DVQAAAARAA  120
AMEPPQPPPS SLTVQADSAA AAFLTPKNGG VSGAGAADDE LEAIVELPRL DELDAAELVF  180
GAAFQDTAAE HPWCDPVWID GGYAAAAAAA AAAAAHDDLF GLDADHHGWA QSVGALLWNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-143495372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048570.0AP004857.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1711_D06.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624743.11e-135ethylene-responsive transcription factor ERF039
SwissprotQ9LYD33e-45DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0D3F2S71e-167A0A0D3F2S7_9ORYZ; Uncharacterized protein
STRINGOBART02G09680.11e-168(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-28ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]