PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART02G07230.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 483aa MW: 51397.6 Da PI: 8.797

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART02G07230.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.8	3.6e-11	185	223	3	41
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 + k rr+++NReAAr+sR+RKka+i++Le+ L++ OBART02G07230.1 185 DAKTLRRLAQNREAARKSRLRKKAYIQNLETSRIRLSQL 223 67999*************************865555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.3E-8	182	227	No hit	No description
SMART	SM00338	2.9E-8	183	246	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.036	185	230	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-8	186	225	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.82E-7	187	230	No hit	No description
PROSITE pattern	PS00036	0	190	205	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.5E-28	272	355	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MGDRPWQQQL QPHDQQAASC SVTAGMMMQA SATSSSIHGN NIIRKDPGGG YDMAELDHIF 60 LYLNSQDQAS AAIQEQPQTL NIFPSQPMHA GEPSPKGSSS MAAINSAPSN NALAIAAGSS 120 KRPLAAAAAG GQPSRLNNPA DQPSASGKDG KAAVVKKEGG GGGGKHHGGA SSAAASEHEG 180 PKTPDAKTLR RLAQNREAAR KSRLRKKAYI QNLETSRIRL SQLEQELVQR SRTQGAILGG 240 GAFSAGVGGQ SPEAAWFDGE YARWVESHER MMAHMRAAVE EQPQHGGVAA AAAEAQLRQL 300 VDAAVAHHGV LVELKAAVAS ADVFHLVSGT WLPAAERCFL WIGGFRPSEL IKMMARHAEP 360 LTEQQAAGVY GVQQSARERE EALDRDLHAT HHALSDAVSS DSLLLFPPST GATAYSDADA 420 LRLQTLYKLP QILTARQSAR CFLAIADHSH RLRALTSLWL SRPRHPDQPA PPPPPPPPIN 480 PRN

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MGDRPWQQQL QPHDQQAASC SVTAGMMMQA SATSSSIHGN NIIRKDPGGG YDMAELDHIF  60
LYLNSQDQAS AAIQEQPQTL NIFPSQPMHA GEPSPKGSSS MAAINSAPSN NALAIAAGSS  120
KRPLAAAAAG GQPSRLNNPA DQPSASGKDG KAAVVKKEGG GGGGKHHGGA SSAAASEHEG  180
PKTPDAKTLR RLAQNREAAR KSRLRKKAYI QNLETSRIRL SQLEQELVQR SRTQGAILGG  240
GAFSAGVGGQ SPEAAWFDGE YARWVESHER MMAHMRAAVE EQPQHGGVAA AAAEAQLRQL  300
VDAAVAHHGV LVELKAAVAS ADVFHLVSGT WLPAAERCFL WIGGFRPSEL IKMMARHAEP  360
LTEQQAAGVY GVQQSARERE EALDRDLHAT HHALSDAVSS DSLLLFPPST GATAYSDADA  420
LRLQTLYKLP QILTARQSAR CFLAIADHSH RLRALTSLWL SRPRHPDQPA PPPPPPPPIN  480
PRN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004184	1e-160	AP004184.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1225_F07.
GenBank	AP014958	1e-160	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	1e-160	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015626935.1	0.0	transcription factor TGAL9-like isoform X1
Swissprot	Q0E342	0.0	TGAL9_ORYSJ; Transcription factor TGAL9
TrEMBL	A0A0D3F1Y5	0.0	A0A0D3F1Y5_9ORYZ; Uncharacterized protein
STRING	OBART02G07230.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2732	36	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	2e-88	bZIP family protein

Publications ? help Back to Top
Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]