PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G03410.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 1159aa    MW: 128520 Da    PI: 6.4399
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G03410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.86.5e-21166267199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d + ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+    ++
  OBART02G03410.1 166 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDIHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIVV--RD 255
                      99*****************************954.4444.49**********************************************99..55 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  OBART02G03410.1 256 EKHQLLLGIRRA 267
                      788889999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575132No hitNo description
SuperFamilySSF1019361.44E-41155295IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-39158281IPR015300DNA-binding pseudobarrel domain
CDDcd100179.41E-18165266No hitNo description
SMARTSM010196.7E-21166268IPR003340B3 DNA binding domain
PROSITE profilePS5086310.912166268IPR003340B3 DNA binding domain
PfamPF023621.2E-18166267IPR003340B3 DNA binding domain
PfamPF065071.5E-33292375IPR010525Auxin response factor
PfamPF023093.9E-910231111IPR033389AUX/IAA domain
PROSITE profilePS5174529.25810261110IPR000270PB1 domain
SuperFamilySSF542773.92E-710441105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1159 aa     Download sequence    Send to blast
MASMKQQQTP ASSAVTAAAA ASSSATAAVA ACEGERKAAA INSELWHACA GPLVSLPPVG  60
SLVVYFPQGH SEQVIIISLS LSLSSSSIID LVAASMQKDV DAHVPSYPNL PSKLICLLHG  120
VNLHADPDTD EVYAQMTLQP VNTYGKEALQ LSELALKQAR PQMEFFCKTL TASDTSTHGG  180
FSVPRRAAEK IFPPLDFSMQ PPAQELQARD IHDNVWTFRH IYRGQPKRHL LTTGWSLFVS  240
GKRLFAGDSV IVVRDEKHQL LLGIRRANRQ PTNISSSVLS SDSMHIGVLA AAAHAAANSS  300
PFTIFYNPRA SPTEFVIPFA KYQKALYSNQ ISLGMRFRMM FETEELGTRR YMGTITGISD  360
LDPVRWKNSQ WRNLQVGWDE SAAGERRNRV SIWEIEPVAA PFFLCPQPFF GVKRPRQLDD  420
ESDMENLFKR AMPWLGEEVC IKDTQNQNST APGLSLVQWM NMNRQQSSSL ANTAAQSEYL  480
QALGNPAMQN LAADELARQL YVQNNLLQQN CIQFNSPKLP QQMQTMNDLS KAAIPLNQLG  540
AIINPQDQKQ DAVNHQRQQN SIQVIPLSQA QSNLVQAQVI VQNQMQQQKP SPTQNPQRIN  600
GQRLLLSHQQ QDQNLQLQQQ LLLQQKQQLQ QQQQQQQNQQ QLNKSLGQLV NLASQQSKLF  660
DEELQLQILQ KLQQQSLMSQ STSTLSQPPL IQEQQKLITD MQKQLSNSHS LAQQQMMPQQ  720
EIKPSLQATP LLPTVQQEQQ QKLLQKQVSL ADVSGVAFQP ISSTNVIPKT GGAMIISGAT  780
QSVVTEEMPS CSTSPSTANG NHFTQSTKNR HCINTERLPP STAPMLIPTS IDAVTATPLM  840
TKELPKPNNN VKQSVVNSKL PNVAPGPQNC INNALQTDNL ETSSSATSLC PSRTDGLVHQ  900
GFPSSNFNQH QMFKDALPDV EMEGVDPSNS GLFGINNDNL LGFPIETEDL LINALDSVKY  960
QNHISTDVEN NYPMQKDALQ EISTSMVSQS FGQSDMAFNS IDSAINDGAF LNKNSWPAAP  1020
PLQRMRTFTK VYKRGAVGRS IDIGRYSGYE ELKHALARMF GIEGQLEDRQ RIGWKLVYKD  1080
HEDDILLLGD DPWEEFVNCV RCIRILSPQE VQQMSLDGDL GSNVLPNQAC SSSDGVNGWR  1140
PRCDQNPRNP SIGPYDQFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1613439645388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052940.0AP005294.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1679_B08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627049.10.0auxin response factor 5 isoform X1
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A0D3F0J70.0A0A0D3F0J7_9ORYZ; Auxin response factor
STRINGOBART02G03410.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19