PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G41700.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 408aa    MW: 43292.3 Da    PI: 6.6982
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G41700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.3e-09214261455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  OBART01G41700.1 214 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 261
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.06E-16208279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.34E-10208265No hitNo description
PROSITE profilePS5088815.256210260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-17212278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6214261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10216266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MNCGPPDQLP PATAPSCFLN LNWDQSMDAA AGGHLDPALS SMVSSPASNS TGALHGISPQ  60
PHYGGGTPLS SPPKLNLSMM GQFHHYAAPP QEMELGNTLD ESSVSDPAPG GAEIPPKGAS  120
DGNARKRKAS GKGKGKDSPM STSAAKEDSS GKRCKSTEES NAAAEENSGK GKAAQSNSEN  180
GGGKKQGKDS SSKPPEPPKD YIHVRARRGE ATDSHSLAER VRREKISQRM KLLQDLVPGC  240
NKVVGKAVML DEIINYVQSL QRQVEFLSMK LATVNPQLDF NNLPNLLAKD MHQSCSPLQS  300
SHFPLETSGA PLPYINQPQQ GNPLGCGLTN GMDNQGSMHP LDPAFCRPMG SHHPFLNGVS  360
DAASQVGAFW QDDLQSVVQM DMGQSQEIAT SSNSYNGSLQ TVHMKMEL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1010630.0AK101063.1 Oryza sativa Japonica Group cDNA clone:J033022O19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621927.10.0transcription factor bHLH77 isoform X2
TrEMBLA0A0D3EXU30.0A0A0D3EXU3_9ORYZ; Uncharacterized protein
STRINGOBART01G41700.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.16e-57bHLH family protein