PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G35360.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 312aa    MW: 33845.5 Da    PI: 6.942
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G35360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.62.2e-22110170257
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSS..TTEEEEEEES--S CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaed..pkvveitYegeHn 57 
                      dDgy+WrKYGqK++++++fprsYYrC+++   +Cp++k+v++ + d  p + +++Y+ eH+
  OBART01G35360.1 110 DDGYQWRKYGQKKINNTNFPRSYYRCSYHrerRCPAQKHVQQRDGDdvPALHVVVYTHEHT 170
                      8***************************99999*******998876446788999*99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-2495173IPR003657WRKY domain
SuperFamilySSF1182901.96E-21104174IPR003657WRKY domain
SMARTSM007741.2E-28109173IPR003657WRKY domain
PROSITE profilePS5081118.418110174IPR003657WRKY domain
PfamPF031063.6E-22110170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MQAQSRLAAA ASGGGGTGAV AFRHELTTLL RVLRGQGQGQ VEATTTFILG EVSRAFTVCL  60
SIMASASPSA SPPQPDETPP ADSAVSPPPP RAAREDNVPR KRLLTASPYD DGYQWRKYGQ  120
KKINNTNFPR SYYRCSYHRE RRCPAQKHVQ QRDGDDVPAL HVVVYTHEHT GRPPSFPTRR  180
RTTPSSLRRL RGVGGGGLQP QFVDHRAAME ERERQVLVSS LARVLQGRQC YDDDDDDDTD  240
VASLGAVHAR APAAAAPVAA SSSSSGPVDA AGEELDVMDY DMTDALFWGP FGTDSNSYDG  300
NLTSTRCFDL IN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-12110172969OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2892500.0AK289250.1 Oryza sativa Japonica Group cDNA, clone: J100080M05, full insert sequence.
GenBankAP0033020.0AP003302.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0703B11.
GenBankAP0033480.0AP003348.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485B12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877887.11e-144probable WRKY transcription factor 4
TrEMBLA0A0D3EVL40.0A0A0D3EVL4_9ORYZ; Uncharacterized protein
STRINGOBART01G35360.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125382837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-14WRKY family protein