PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART01G34650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 419aa MW: 47861.6 Da PI: 5.4874 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 92.2 | 8.6e-29 | 124 | 261 | 3 | 127 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratk.sgyWkatgkdkevls 94 pG+rF P+d el+ ++L++k++g++l+ + ++ +d+y+ +P++L +k+ +e +wy Fs+r++ky++gkr++r+t g+Wk+t k+++vl+ OBART01G34650.1 124 PGIRFVPSDIELILDFLRPKLRGEQLPSYSYMHVCDVYSDHPKELTSKLGPsREGNWYMFSPRNRKYNKGKRPSRSTGqLGFWKSTTKNEAVLD 217 9***************************999**************9655541556********************66538*************9 PP NAM 95 k..kgelvglkktLvfy.........kgrapkgektdWvmheyr 127 + ++ l+g k L+++ k +++++ kt W m e+ OBART01G34650.1 218 AlsDNMLIGYKACLTYHeydesmptpKLKKENAIKTPWKMWEFV 261 9888889**********8887777766899999*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 36.215 | 122 | 289 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.62E-37 | 122 | 289 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-14 | 124 | 261 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MAESSESAWP QQSQQLQISS TMPAGSAWPE EENLENLEQP LPLLMPSSED HREQQLVPVP 60 WLQQDQDQEW HEQEQFLLLP WLHQDQEWHE QEQFLLLKNQ NQEQLQDQQP LQDQEETRRY 120 LGVPGIRFVP SDIELILDFL RPKLRGEQLP SYSYMHVCDV YSDHPKELTS KLGPSREGNW 180 YMFSPRNRKY NKGKRPSRST GQLGFWKSTT KNEAVLDALS DNMLIGYKAC LTYHEYDESM 240 PTPKLKKENA IKTPWKMWEF VCSNSNRPFD AEEKPMRLND WVLCKVTNKD NKVTTKKFKP 300 QRSKKPKKPK KLQQEEQPQN QGIVIRQPSE SSSASSSHQE IPGSSLPGAG GDAAAAATAA 360 AAAVDPMPLH MIPPSSWNYF STGVTADGIV MDDSTGVDSY GCVDGAGALN FQRNIFYHR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-17 | 124 | 291 | 17 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639570.1 | 0.0 | protein ATAF2 | ||||
TrEMBL | A0A0D3EVB5 | 0.0 | A0A0D3EVB5_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G34650.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16068 | 14 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 3e-20 | NAC domain containing protein 47 |