PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART01G29800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 156aa MW: 16293 Da PI: 10.2317 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.6 | 3.9e-31 | 94 | 152 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+vers++dp++v++tY+ eHnh+ OBART01G29800.1 94 TDSWAWRKYGQKPIKGSPFPRAYYRCSSSkGCPARKQVERSRNDPDTVIVTYSFEHNHS 152 69*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 31.204 | 88 | 154 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.8E-31 | 90 | 153 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-26 | 91 | 153 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-36 | 93 | 153 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.6E-27 | 95 | 151 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MDGEWSDGAA VSSPTMSGGG GREQMKGGED VAAADCPGSP VSPSPAAAQR SAAGAAASPS 60 GRSRRSAQKR VVTVPLADVT GPRPKGVGEG NTPTDSWAWR KYGQKPIKGS PFPRAYYRCS 120 SSKGCPARKQ VERSRNDPDT VIVTYSFEHN HSATSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 4e-19 | 66 | 151 | 3 | 76 | Disease resistance protein RRS1 |
5w3x_D | 4e-19 | 66 | 151 | 3 | 76 | Disease resistance protein RRS1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109770 | 0.0 | AK109770.1 Oryza sativa Japonica Group cDNA clone:002-147-A06, full insert sequence. | |||
GenBank | AY870603 | 0.0 | AY870603.1 Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624912.1 | 1e-106 | probable WRKY transcription factor 65 | ||||
Swissprot | Q9LP56 | 5e-41 | WRK65_ARATH; Probable WRKY transcription factor 65 | ||||
TrEMBL | A0A0D3ETN1 | 1e-108 | A0A0D3ETN1_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G29800.1 | 1e-108 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10947 | 33 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 7e-39 | WRKY DNA-binding protein 65 |
Publications ? help Back to Top | |||
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