PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G29350.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 266aa    MW: 29869.4 Da    PI: 11.0725
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G29350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.91.5e-2121120199
                      EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      ffkvl     + ++rl +p +f++++        +g ke s+  tle +sgr+W v +  r++ +++++t+GW +Fv+++ L+e +fvvF++dg
  OBART01G29350.1  21 FFKVL--VGDF-KQRLKIPPNFCKHIpweesrkaKGLKEASMAATLEGPSGRTWLVVI--RRTAEGTFFTSGWPKFVQDQALRELEFVVFRYDG 109
                      56666..3444.457********888******996666799*****************..*********************************9 PP

                      SSEE..EEEEE-S CS
               B3  87 rsefelvvkvfrk 99 
                      +++f  + +vf++
  OBART01G29350.1 110 NTRF--TAMVFDR 120
                      9999..6666665 PP
2B351.71.6e-161662431498
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      + +++p  f ++h   ++e ++++l+d+ g++W+v +i  ++++r  l++GW  F++ n L+egD +vF+l+   ef  +v++fr
  OBART01G29350.1 166 KEMRFPTGFSRQHL--PRERTDVVLRDPGGKVWSVLYI-PNTRDR--LSRGWCAFARGNCLEEGDYCVFELVAAAEF--RVHIFR 243
                      34899*****9995..345679***************4.444455..9**********************9986666..999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-2116123IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-2117125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.01418121IPR003340B3 DNA binding domain
CDDcd100171.99E-1719119No hitNo description
SMARTSM010196.1E-1321121IPR003340B3 DNA binding domain
PfamPF023623.1E-1921119IPR003340B3 DNA binding domain
PROSITE profilePS5086313.394153245IPR003340B3 DNA binding domain
SMARTSM010194.2E-9156245IPR003340B3 DNA binding domain
CDDcd100171.76E-20160243No hitNo description
Gene3DG3DSA:2.40.330.105.4E-21161243IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-21162243IPR015300DNA-binding pseudobarrel domain
PfamPF023624.5E-15166243IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MPGAGGKKKS PWASGERRPH FFKVLVGDFK QRLKIPPNFC KHIPWEESRK AKGLKEASMA  60
ATLEGPSGRT WLVVIRRTAE GTFFTSGWPK FVQDQALREL EFVVFRYDGN TRFTAMVFDR  120
TACEREDLMG GGGGGGGDRP RKKRGRPRTA AASRDAARPK KDSVGKEMRF PTGFSRQHLP  180
RERTDVVLRD PGGKVWSVLY IPNTRDRLSR GWCAFARGNC LEEGDYCVFE LVAAAEFRVH  240
IFRVVEPAVP AVRLRRVTVT CGRGPT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032290.0AP003229.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0022F10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614236.11e-102B3 domain-containing protein Os01g0723500
SwissprotQ8S2E61e-103Y1235_ORYSJ; B3 domain-containing protein Os01g0723500
TrEMBLA0A0D3ETI00.0A0A0D3ETI0_9ORYZ; Uncharacterized protein
STRINGOBART01G29350.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127923135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.14e-16B3 family protein