PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G25690.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 507aa    MW: 52926.4 Da    PI: 8.4896
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G25690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1053.9e-33297354259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dp vv++tYeg+H+h+
  OBART01G25690.1 297 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSYQDPAVVITTYEGKHTHP 354
                      8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-35281356IPR003657WRKY domain
SuperFamilySSF1182901.7E-29288356IPR003657WRKY domain
PROSITE profilePS5081132.535291356IPR003657WRKY domain
SMARTSM007742.6E-39296355IPR003657WRKY domain
PfamPF031062.9E-26297354IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MGGEPRARAE AAWAAALPAA LVALVRDTAT YTRMMHRLRM ETPRGPTCQL DPCCCCCTAH  60
VIPPPPPVSA APPPLRAPRA SDGGRRRGVV KGGAGTDTCR SAATAKNHEH GQRRREAAVD  120
PAMSGEYQFQ DELAPLFARP GGGAGEMQML PSSWFADYLQ AGTPMQMDYD LMCRALELPV  180
GEDVKREVGV VDVVAAGGGG APPLTPNTTS SMSTSSSEGV GGGGGGGAGA GAGEEESPAR  240
CKKEEEDENK EEGKGEEDGH KNKKGSAAKG GKAGKGEKRA RQPRFAFMTK SEVDHLEDGY  300
RWRKYGQKAV KNSPYPRSYY RCTTQKCPVK KRVERSYQDP AVVITTYEGK HTHPIPATLR  360
GSTHLLAAHA QAAAAAAAAH QLHHHHGHHG HHGMAPPLPL GSGAAAQFGR SSGIDVLSSF  420
LPRAAAAHHG MTTMGGAAAT TTTSHGLNSA ISGGGGVSSE TTSAVTVAAS AQPSSPAALQ  480
MQHFMAQDLG LLQDMLLPSF IHGTNQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-27287357878Probable WRKY transcription factor 4
2lex_A2e-27287357878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418440.0AY341844.1 Oryza sativa (japonica cultivar-group) WRKY3 mRNA, complete cds.
GenBankAY3418550.0AY341855.1 Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds.
GenBankAY8706040.0AY870604.1 Oryza sativa (japonica cultivar-group) WRKY16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640235.10.0uncharacterized protein LOC4326856 isoform X1
TrEMBLA0A0D3ES750.0A0A0D3ES75_9ORYZ; Uncharacterized protein
STRINGOBART01G25690.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.16e-48WRKY DNA-binding protein 71