PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART01G23900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ZF-HD | ||||||||
Protein Properties | Length: 232aa MW: 25427.5 Da PI: 8.791 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 91.5 | 7.5e-29 | 37 | 88 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++rY+eCl+NhAa+ Ggh+vDGCgEfmp+ +t + l CaACgCHR+FHRr+++ OBART01G23900.1 37 RCRYHECLRNHAAASGGHVVDGCGEFMPA----STEEPLACAACGCHRSFHRRDPS 88 79**************************9....5668****************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 9.0E-33 | 21 | 86 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 8.4E-24 | 38 | 86 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.1E-25 | 39 | 86 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.818 | 40 | 86 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-27 | 148 | 221 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.05E-17 | 150 | 220 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 7.4E-24 | 160 | 215 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MELSEHEEDA GDVGGGCSSP PTPPHRVLTS AAPETIRCRY HECLRNHAAA SGGHVVDGCG 60 EFMPASTEEP LACAACGCHR SFHRRDPSPG RAGAARLLQL HLPASINSRA PPVLLLPPAA 120 AASKQGLPFP GYGTPSGGTG TTTASSSDER LRPSPVQPRR RSRTTFTREQ KEQMLAFAER 180 VGWRIQRQEE ATVEHFCAQV GVRRQALKVW MHNNKHSFKQ KQQQENRQEQ QQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-24 | 160 | 217 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622496.1 | 1e-169 | zinc-finger homeodomain protein 5 | ||||
Refseq | XP_015622497.1 | 1e-169 | zinc-finger homeodomain protein 5 | ||||
Swissprot | A2WSZ6 | 1e-171 | ZHD5_ORYSI; Zinc-finger homeodomain protein 5 | ||||
TrEMBL | A0A0D3ERM2 | 1e-170 | A0A0D3ERM2_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G23900.1 | 1e-170 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 5e-40 | homeobox protein 22 |