PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G23290.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 292aa    MW: 31292.5 Da    PI: 7.9021
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G23290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.45.1e-27136194259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YY+C+s  gC+++k vers   p ++++tY  eH h+
  OBART01G23290.1 136 SDLWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKMVERSPAKPGMLVVTYMAEHCHP 194
                      799***********************9988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081130.377130196IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-27131196IPR003657WRKY domain
SuperFamilySSF1182909.15E-25133196IPR003657WRKY domain
SMARTSM007741.6E-32135195IPR003657WRKY domain
PfamPF031068.4E-23137194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MRGPLLLRAV VVVAMEHFND WDLQAVVRSC SFPQSEPPRV GVGAVRPRPF LLPGSSSSSS  60
SSRAVARARG EDDGKGRHEV MISFPAAAAA STSGAQPRSP SGRKPGIRTP RPKRSKKSQL  120
KKVVYEVPVA DGGVSSDLWA WRKYGQKPIK GSPYPRGYYK CSSMKGCMAR KMVERSPAKP  180
GMLVVTYMAE HCHPVPTQLN ALAGTTRHKL PSSSAAGEGV VKCEDVDGNE LSAMAADGGA  240
EDTAAAADDD GELWPEGMGL ELDEFLGPMD DDVFEFDHVL EDDGVLGRRL SL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-21117197280Disease resistance protein RRS1
5w3x_D3e-21117197280Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114160.0AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence.
GenBankAY8706010.0AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640600.11e-165WRKY transcription factor 22
TrEMBLA0A0D3ERE90.0A0A0D3ERE9_9ORYZ; Uncharacterized protein
STRINGOBART01G23290.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.17e-42WRKY family protein