PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART01G21400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 144aa MW: 15572 Da PI: 10.2472 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 67.9 | 3.4e-21 | 1 | 46 | 24 | 69 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssss 69 ++ +caar+F+L++eLG+++d++t++WLlqqa+ ai +tgt+ + OBART01G21400.1 1 MPTLCAARIFQLTRELGHKSDGETVQWLLQQAELAIVTATGTGVGA 46 899***************************************4433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.6E-16 | 1 | 42 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 18.91 | 1 | 39 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MPTLCAARIF QLTRELGHKS DGETVQWLLQ QAELAIVTAT GTGVGADIRR TLPLFPKLRP 60 LQVAPPPPPH VGCRRGVRRC HIGFATMFAA HAAAAMPGLE LGLSQDGHIG MLFARSLSQF 120 YHQVGGASAA GQLPHPHHHH QHHQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003253 | 0.0 | AP003253.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0451D05. | |||
GenBank | AP003333 | 0.0 | AP003333.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1103C09. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638501.2 | 9e-49 | LOW QUALITY PROTEIN: transcription factor TCP20 | ||||
TrEMBL | A0A0D3EQS6 | 6e-99 | A0A0D3EQS6_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G21400.1 | 1e-99 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2864 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 5e-21 | TCP family protein |