PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART01G20140.2

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 770aa MW: 82854.7 Da PI: 5.8472

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G20140.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.9	4.5e-10	474	495	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f+++G C +Gd+CkF+H+ OBART01G20140.2 474 PCHNFMENGMCIRGDKCKFSHV 495 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.676	444	468	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0019	445	470	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.11E-5	445	469	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.455	469	497	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0018	472	496	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.36E-6	473	496	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.5E-4	474	494	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.3E-7	474	495	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 770 aa Download sequence Send to blast
MEEPSPVPPA AAPASLAAAP PTTDVLSRRR AHLDSASYRA LSRLFSHCLH LHPPRHAARP 60 DAEVEPAAAA AAAAIPPGGS GGLPHGDSPP PADVGGDRGK NLEVEVALGN HAPHETPSTS 120 ASPDAAVNPT TDPGVVPQGT EEGRVAGVER VEGVEEVVFA GGTSGEADAD GDELGAGAGL 180 MGDDEALRSM QACLDGEDSE LVIEMVGNDD EQLQLDAMMN NLSGLIDDAS ACVMSAQSCG 240 VSGDKLQSDD RVAEEVKELG AGIGNDRSVC SLDHGSLDGG GGFEEGEIEG DTQNLDADDS 300 GNSELQDDVE LEEDFDSRRI EEDGSCGHDL KSNLHLIPQK GNGGTARNML CNSKGDSQMH 360 VARAQAVSYD EVLDWNETPL PDDKALKHGN TRKRTLTEER KAKKTKTKRI KRALQREAEG 420 VKRLKLQPVI KPKVVKVCHF YLHGKCQQPC THYARGSCLK GDDCPYDHEL SKYPCHNFME 480 NGMCIRGDKC KFSHVIPTAE GPSTPDAKKS NASSVPEKAN CQEQTSRQKT STVYSGEPAT 540 SVPIKHHSIL KNLAGISGNA QKDVVSTEKH KNPTGGPHQN FGRPQPADGK KLGKHNGHRS 600 APLLDEKDSS KQANLHPCSE PKKNSLPTTA AVPSSHTWML FSDEPVAMRL CSIFCIPHTS 660 FIAVTPSCKL QLLMWTYFAE LGANIYCQIL KIGNYQMNAL LFNPQAYNSK SQFLIFISLQ 720 QQEANSAAKG SMPVCIHQLV LSMFLNKDLN WKVGVYLFVW DYENAKRHMT

Sequence ? help Back to Top

Protein Sequence Length: 770 aa Download sequence Send to blast

MEEPSPVPPA AAPASLAAAP PTTDVLSRRR AHLDSASYRA LSRLFSHCLH LHPPRHAARP  60
DAEVEPAAAA AAAAIPPGGS GGLPHGDSPP PADVGGDRGK NLEVEVALGN HAPHETPSTS  120
ASPDAAVNPT TDPGVVPQGT EEGRVAGVER VEGVEEVVFA GGTSGEADAD GDELGAGAGL  180
MGDDEALRSM QACLDGEDSE LVIEMVGNDD EQLQLDAMMN NLSGLIDDAS ACVMSAQSCG  240
VSGDKLQSDD RVAEEVKELG AGIGNDRSVC SLDHGSLDGG GGFEEGEIEG DTQNLDADDS  300
GNSELQDDVE LEEDFDSRRI EEDGSCGHDL KSNLHLIPQK GNGGTARNML CNSKGDSQMH  360
VARAQAVSYD EVLDWNETPL PDDKALKHGN TRKRTLTEER KAKKTKTKRI KRALQREAEG  420
VKRLKLQPVI KPKVVKVCHF YLHGKCQQPC THYARGSCLK GDDCPYDHEL SKYPCHNFME  480
NGMCIRGDKC KFSHVIPTAE GPSTPDAKKS NASSVPEKAN CQEQTSRQKT STVYSGEPAT  540
SVPIKHHSIL KNLAGISGNA QKDVVSTEKH KNPTGGPHQN FGRPQPADGK KLGKHNGHRS  600
APLLDEKDSS KQANLHPCSE PKKNSLPTTA AVPSSHTWML FSDEPVAMRL CSIFCIPHTS  660
FIAVTPSCKL QLLMWTYFAE LGANIYCQIL KIGNYQMNAL LFNPQAYNSK SQFLIFISLQ  720
QQEANSAAKG SMPVCIHQLV LSMFLNKDLN WKVGVYLFVW DYENAKRHMT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003308	0.0	AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622402.1	0.0	zinc finger CCCH domain-containing protein 7
Refseq	XP_015622403.1	0.0	zinc finger CCCH domain-containing protein 7
Swissprot	Q657B3	0.0	C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBL	A0A0D3EQD0	0.0	A0A0D3EQD0_9ORYZ; Uncharacterized protein
STRING	OBART01G20140.1	0.0	(Oryza barthii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.2	9e-06	C3H family protein

Publications ? help Back to Top
Noller B,Fischer I Photodissociation dynamics of the 2-propyl radical, C3H7. J Chem Phys, 2007. 126(14): p. 144302 [PMID:17444707] Ali MA,Dillstrom VT,Lai JY,Violi A Ab initio investigation of the thermal decomposition of n-butylcyclohexane. J Phys Chem A, 2014. 118(6): p. 1067-76 [PMID:24344976]