PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G08800.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 390aa    MW: 40819.1 Da    PI: 4.9775
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G08800.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like51.62e-16209246139
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvk 39 
                      k +++WtpeLH+rFv+aveqL G++kA+P++ilelm+++
  OBART01G08800.2 209 KVKVDWTPELHRRFVQAVEQL-GIDKAVPSRILELMGIE 246
                      5689*****************.**************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.09E-8207246IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-14207246IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-14209247IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MLEVSTLRSP KADQRAGVGG HHVVGFVPAP SPADVADEVD AFIVDDSCLL EYIDFSCCDV  60
PFFHADDGDI LPDLEVDPTE LLAEFASSPD DEPPPTSAAS PGEPAAAGGA KEDVKEDGAA  120
AAADYDGSPP PPRGKKKDEE ERSSSLLEEK DAKNGGGGGD EVLSAVTTED SSAGAAKSSS  180
PSAEGHSKRK PSSSSSSAAA GKNSHGKRKV KVDWTPELHR RFVQAVEQLG IDKAVPSRIL  240
ELMGIEKHLM AREAEAASWT QKRQIIVHAA RKWGPQAVTP GTPCMPPPLP PAAMLQRFPV  300
PPVPGMVPHP MYRPIPPPLP PQGNKLAALQ LQLDAHPSKE SIDAAIGDVL VKPWLPLPLG  360
LKPPSLDSVM SELHKQGIPK VPPAASGAAG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8340420.0CT834042.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA220E01, full insert sequence.
GenBankCT8340430.0CT834043.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI203A14, full insert sequence.
GenBankCT8340440.0CT834044.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI210C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615905.11e-135probable transcription factor GLK2 isoform X1
SwissprotQ5NAN51e-136GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBLA0A0D3ELK60.0A0A0D3ELK6_9ORYZ; Uncharacterized protein
STRINGORGLA01G0079000.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.19e-27GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]