PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G07010.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 308aa    MW: 35540.7 Da    PI: 7.8218
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G07010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49e-15146194348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT+eEd  l ++ + +G ++W+++a++m+    +R++kqc++rw+++l
  OBART01G07010.1 146 AWTPEEDACLERLARGYGFRHWRRVAEEMQpreRRRSPKQCRDRWRDHL 194
                      8*********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.194139198IPR017930Myb domain
SMARTSM007176.4E-12143196IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-16146204IPR009057Homeodomain-like
CDDcd001678.71E-12146194No hitNo description
SuperFamilySSF466891.45E-17146218IPR009057Homeodomain-like
PfamPF002494.2E-14146194IPR001005SANT/Myb domain
PROSITE profilePS500906.144195247IPR017877Myb-like domain
SMARTSM0071738199249IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-4205248IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MYQTILHNRM IPNRYQVSND STHVSGDTYK YHVILIRYHM IFYHVSRDTR KVSDDFNHVS  60
RDTHEVSCDI CRVSDDFYHV SRDTREVSGD FYHVSRDTCE VSDNTYQVSV HLGMETSSSD  120
FSSTTEVAVT PSSAMKIILR IRLSPAWTPE EDACLERLAR GYGFRHWRRV AEEMQPRERR  180
RSPKQCRDRW RDHLARDVYH RPFTADDDAE LAHLRLRGGG GDRWKDISRA AHCRISRAMR  240
RRWRELRKSD AFLRALYWHP DQPVPPLLDD ALSCSDVLDS SVASYHGGCD AVAGGGTIVA  300
PGFACFAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0020920.0AP002092.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0031E09.
GenBankAP0020930.0AP002093.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0466B10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636830.11e-100transcription factor MYB3R-5
TrEMBLA0A0D3EKZ60.0A0A0D3EKZ6_9ORYZ; Uncharacterized protein
STRINGOBART01G07010.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83601346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.12e-15myb domain protein r1