PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART01G06440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 229aa MW: 24655.5 Da PI: 6.3062 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.2 | 7.5e-17 | 46 | 94 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f +e+Aa+a++ a+++++g OBART01G06440.1 46 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPCPEMAARAHDVAALSIKG 94 9****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.4E-34 | 45 | 108 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.8 | 45 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-9 | 46 | 57 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-30 | 46 | 103 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.77E-29 | 46 | 104 | No hit | No description |
Pfam | PF00847 | 9.8E-12 | 46 | 94 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-20 | 46 | 103 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.8E-9 | 68 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MAASEQSSES SSTASTSSCG KKQQVAGKRK REDVGGGGEQ AAAVAYRGVR MRAWGKWVSE 60 IREPRKKSRI WLGTFPCPEM AARAHDVAAL SIKGARAVLN FPDLAPALPR PASLAPRDVQ 120 AAAALAAVMY HHKHPSSSTS TSSPPAAPPP DEHHPRHEPQ QPESSREDDQ QQQPAAAAAA 180 AQMAVAELVF DELAPLWVED VVEFGTSDHC WTAYDALDPI GFQPLLWEY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-17 | 33 | 102 | 2 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108873 | 0.0 | AK108873.1 Oryza sativa Japonica Group cDNA clone:002-152-C11, full insert sequence. | |||
GenBank | AP003197 | 0.0 | AP003197.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1015E06. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY339374 | 0.0 | AY339374.1 Oryza sativa (japonica cultivar-group) Ap21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644400.1 | 1e-119 | ethylene-responsive transcription factor TINY | ||||
Swissprot | Q9LYD3 | 5e-44 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A0D3EKS6 | 1e-165 | A0A0D3EKS6_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1NL70 | 1e-165 | I1NL70_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA01G0061000.1 | 1e-165 | (Oryza glaberrima) | ||||
STRING | OBART01G06440.1 | 1e-165 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 4e-31 | ERF family protein |
Publications ? help Back to Top | |||
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