PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G04210.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 274aa    MW: 30684.3 Da    PI: 5.8268
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G04210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.4e-1975124255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr++  +g+WvAeIr+p   + r +r +lg+f ta eAa a+++a+++++g
  OBART01G04210.1  75 AYRGVRQRT-WGKWVAEIREP---N-RgRRLWLGSFPTALEAAHAYDEAARAMYG 124
                      59****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-1374124IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2075133IPR016177DNA-binding domain
SMARTSM003804.1E-3375138IPR001471AP2/ERF domain
PROSITE profilePS5103221.82575132IPR001471AP2/ERF domain
CDDcd000189.45E-3076134No hitNo description
Gene3DG3DSA:3.30.730.108.7E-3176133IPR001471AP2/ERF domain
PRINTSPR003676.4E-97687IPR001471AP2/ERF domain
PRINTSPR003676.4E-998114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MERGEGRRGD CSVQVRKKRT RRKSDGPDSI AETIKWWKEQ NQKLQEENSS RKAPAKGSKK  60
GCMAGKGGPE NSNCAYRGVR QRTWGKWVAE IREPNRGRRL WLGSFPTALE AAHAYDEAAR  120
AMYGPTARVN FADNSTDANS GCTSAPSLMM SNGPATIPSD EKDELESPPF IMANGPAVLY  180
RPDKKDVLER VVPEVQDVKT EGSNGLKRVC QEQKTMEVCE SEGIVLHKEV NISYDYFNVH  240
EVVEMIIVEL SADQKTEVHE EYQEGDDGFS LFSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1476131359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A1e-13761311571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3009710.0AF300971.2 Oryza sativa DRE binding protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878770.10.0dehydration-responsive element-binding protein 2A
SwissprotA2WL190.0DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
TrEMBLA0A0D3EJZ20.0A0A0D3EJZ2_9ORYZ; Uncharacterized protein
STRINGOMERI01G04060.10.0(Oryza meridionalis)
STRINGORUFI01G04360.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.13e-35ERF family protein